FMO04575.5prime Sequence
1223 bp (1041 high quality bases) assembled on 2008-08-04
> FMO04575.5prime
TACATTATACGAAGTTATCAGTCGACATGTGTATCTTTAAAAAAAGAGAC
GCTTATCATCAGGCGGTTATTATGAAAGGCAATCATTATAAAATGTCTCG
TAACAAAGACAAATACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGT
CGCAGGAGGACATAGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAG
ATTACTGGCTGCGTCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCA
TCTAACCGCCCTCTACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAG
ACGTTGGCATGCTGACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAG
CTAAGAAGTCTTCCCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCT
GTTGCTGAACAACAACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGC
TGTTCCACCTCGTCATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAG
TTCATGAACATCTACAACGAACCGAACGGCACGCAGAAACTGCTCACCTA
CATGCTGGACAACTTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCT
GGCTGCCACTGGCCAAGCCCAACAAAAACGCGACCAGCCTGCATTTTTAC
GGTCATGTGCTATAATGTGCTCTGCGACAAGTACGCGACGCGACAAATGT
ACGGATACTGTCCGTCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCG
ATTATCGACGAGATACGGCACTATGCAGCGGACATTATCAGTCTGCAGGA
GATCGAAACGGAGCAATTTCTATCACTTCTTCCTGCCGGAACTCAAGAAC
GATGGGTACGAGGGAATCTTCTCACCGAAGTCGCGTGCTAAGACTATGTC
CGAGCTGGAGAGGAAGTACGTCGATGGGCTGTGCGATATCTTCAGGCGTC
CAAGTTTACGCTGATCAAGAATCATTGATCGAGTTCAATCAGCTGGCAAT
GGCCATGCCGAGGGCTCGAACACATGCTGAACCGCGTAATGCTTAAGGAT
AACCTCGGTCTGGCCGCACTGCTCAAGGGTGAAGAAAAACGCAATGGGGC
GAGTCCAGAGGTGACGCGAATCCTGCGATCGCTGCTCGCTTGCACGGCCA
CATACCTGGACTTGATCCGCGACCTCCAGTATCCGAACAATGATGTCTAC
ATGAAGTTGACAGAAATATATCT
FMO04575.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RC | 2586 | CG31137-RC | 38..1169 | 27..1155 | 5090 | 97.4 | Plus |
| twin-RE | 3548 | CG31137-RE | 320..1433 | 45..1155 | 5000 | 97.3 | Plus |
| twin-RF | 2690 | CG31137-RF | 162..1273 | 47..1155 | 4990 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24199291..24199587 | 939..641 | 1395 | 99.3 | Minus |
| 3R | 32079331 | 3R | 24219964..24220157 | 395..202 | 955 | 99.5 | Minus |
| 3R | 32079331 | 3R | 24219600..24219776 | 570..394 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 24220214..24220345 | 208..77 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 24199086..24199213 | 1078..954 | 430 | 94.5 | Minus |
| 3R | 32079331 | 3R | 24199882..24199951 | 641..571 | 305 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:24 has no hits.
FMO04575.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:24 Download gff for
FMO04575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RC | 38..1109 | 27..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:56 Download gff for
FMO04575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RC | 38..1109 | 27..1098 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:51 Download gff for
FMO04575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RC | 38..1109 | 27..1098 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:51 Download gff for
FMO04575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24220215..24220343 | 79..207 | 100 | <- | Minus |
| 3R | 24220532..24220563 | 47..78 | 100 | <- | Minus |
| 3R | 24220828..24220847 | 27..46 | 100 | | Minus |
| 3R | 24199086..24199213 | 954..1078 | 94 | <- | Minus |
| 3R | 24199275..24199587 | 641..953 | 98 | <- | Minus |
| 3R | 24199883..24199951 | 571..640 | 98 | <- | Minus |
| 3R | 24219600..24219775 | 395..570 | 100 | <- | Minus |
| 3R | 24219965..24220151 | 208..394 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:24 Download gff for
FMO04575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20045322..20045497 | 395..570 | 100 | <- | Minus |
| arm_3R | 20024808..20024935 | 954..1078 | 94 | <- | Minus |
| arm_3R | 20024997..20025309 | 641..953 | 98 | <- | Minus |
| arm_3R | 20025605..20025673 | 571..640 | 98 | <- | Minus |
| arm_3R | 20045687..20045873 | 208..394 | 100 | <- | Minus |
| arm_3R | 20045937..20046065 | 79..207 | 100 | <- | Minus |
| arm_3R | 20046254..20046285 | 47..78 | 100 | <- | Minus |
| arm_3R | 20046550..20046569 | 27..46 | 100 | | Minus |
