FMO04577.5prime Sequence
336 bp (336 high quality bases) assembled on 2008-08-04
> FMO04577.5prime
GCATACATTTTTACGAAGTTATCAGTCGACATGCCGGCCGATCAAATTCA
ATACTCAGAGAAGTACTTCGACGACAACTTTGAATACAGGCATGTTATCT
TGCCACCGGATTTGGCCAAACATGTGCCGAAGGCTCATCTGATGACCGAG
ACGGAGTGGCGCAACCTGGGCGTGCAGCAGAGCCCCGGCTGGGTGCACTA
CATGGTCCACGCGCCGGAGCCGCATGTGATTCTATTCCGACGCAAACGCA
TTCCGGCAGAGGACGCTCCACAGGTGGCAGCCGCTAATGCGGCTCAGGCC
ATCGCGAATCTCTGCGGTGCAAGCTTTCTAGACCAT
FMO04577.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cks85A-RC | 2904 | CG9790-RC | 83..370 | 31..318 | 1440 | 100 | Plus |
| Cks85A-RB | 666 | CG9790-RB | 139..426 | 31..318 | 1440 | 100 | Plus |
| Cks85A-RA | 610 | CG9790-RA | 83..370 | 31..318 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8715440..8715671 | 318..87 | 1160 | 100 | Minus |
| 3R | 32079331 | 3R | 8715738..8715797 | 90..31 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:52:29 has no hits.
FMO04577.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:03 Download gff for
FMO04577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 78..375 | 22..324 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:00:55 Download gff for
FMO04577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 55..352 | 22..324 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:43 Download gff for
FMO04577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cks85A-RA | 78..375 | 22..324 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:43 Download gff for
FMO04577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8715435..8715668 | 90..324 | 98 | <- | Minus |
| 3R | 8715739..8715802 | 22..89 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:03 Download gff for
FMO04577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4541157..4541390 | 90..324 | 98 | <- | Minus |
| arm_3R | 4541461..4541524 | 22..89 | 94 | | Minus |
