FMO04580.5prime Sequence
740 bp (738 high quality bases) assembled on 2008-08-04
> FMO04580.5prime
AAGTTATCAGTCGACATGGAGAAGCGACAGAGGGAGCTGGAGGCGCTGGT
GTCCACCCAAAAGGAGCAACTGGGGCGCTATGAAAAGCGTCTAAAAGACG
TGGTCACTGCCTACAAGGGTCTGCTTAAGGAGAAGGAGGCATTGGAGACG
AGTCTGGCGGCGCATGCGGAGGCCACGGCGGTGGGCGAGTCCGGATCGCC
GGCCAGGGAGTTGGAGTCCAAAAAAACCAGCACCGACTCTGCGGATGGAG
CAACCGAGGGCGCTGCACCGGGTCCGCCTGCTCCCCCGGCCGAGGGTCAA
CTGCAGACCCAAATTATCACCCTGATGAACTCGCTGGCCACTCTTTCCGC
TGAGAAATCCCGCATGGAGGCCTCCTTTCAGGCGGATAAAAAGCAACTGC
GCAGCCAAATCGCCCAAAAGGAGCAGACCATTCAGGAGCTTAATACCCGG
GCCAAGGAGCAGGCTGCTCGGGCCAAAAGCGACGTGGACGAGATCAAGGC
CAAGTGGATCGTGGAGCGACATGAGCGCGAGAAAAGAGACCAACAACCAA
ATGCTCATGATCCGCGAACTGCAGAAACTCTATGCGGACGAGCGGCATCT
AAAAGGACAACATTGAGATGCAGTTAAACAACTTCAAGACCCAGTTCGCC
AGCAACGAGCAGAGAATAGCCGGCTACGGGATTTGCAATCCCAGCTAAAA
GGAGGCTCGCTCCCAGCTGAAAACAGTTTCAGGCCAAGAT
FMO04580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GCC88-RA | 2322 | CG10703-RA | 148..872 | 12..739 | 3460 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11229676..11230316 | 739..96 | 2930 | 98.8 | Minus |
| 3R | 32079331 | 3R | 11230368..11230453 | 97..12 | 415 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:08 has no hits.
FMO04580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:02 Download gff for
FMO04580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 140..872 | 4..740 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:58:18 Download gff for
FMO04580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10703-RA | 108..840 | 4..740 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:40 Download gff for
FMO04580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GCC88-RA | 140..872 | 4..740 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:40 Download gff for
FMO04580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11229675..11230314 | 98..740 | 98 | <- | Minus |
| 3R | 11230368..11230461 | 4..97 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:02 Download gff for
FMO04580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7055397..7056036 | 98..740 | 98 | <- | Minus |
| arm_3R | 7056090..7056183 | 4..97 | 95 | | Minus |
