FMO04581.5prime Sequence
1093 bp (983 high quality bases) assembled on 2008-08-04
> FMO04581.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCACATTATCT
GCAAGTCGCAGTGCGGAAATCGCGCTGCTTTGAAGCGACCCAAAACCGGC
GATGCCCTGTGCAAGGAGTGCTTCTTCGCAGCCTTCGAGGCAGAGATCCA
TCACACAATCTCCTCCAGCAACTTGTTCCGACGTGGCGAGAAGGTGGCCG
TAGCGGCCAGTGGAGGCAAGGACTCCACGGTCCTAGCGCACGTATTAAAA
CTGCTAAACGAACGCCATAACTACGGTCTGGAACTGGTGCTCCTTTCCAT
AGACGAAGGCATCACTGGATATCGGGATGACAGTTTGGAGACAGTGAAAC
AGAACCGTGACGACTACCAGATGCCACTAAAGATCCTGTCCTACGAGGAG
CTCTACGGCTGGACCATGGACCGCATTGTTGCCCAGATCGGCCGTTCTAA
CAACTGCACATTTTGCGGCGTCTTCCGCCGACAGGCCTTGGATAGAGGGG
CCAAGCTGTTGGGCGTTGATAGCATAGCCACAGGCCACAATGCAGATGAC
ATTGCGGAGACTGTCTTGATGAACGTGCTCCGTGGGGACACGGCGCGCCT
GCGACGCTGCACGAGCATCCGCACCGGCGGGGGCGAGGATACCATTCCCC
GAGTGAAGCCCCTCAAGTACAGCTACGAGAAAGAAATCGTGATGTACGCC
CACTACAAAAAGCTGGTCTACTTCTCAACGGAGTGCGTATTCGCCCCCAA
ATGCGTATCGCGGCCACGCTCGAGCGTTTCTCAAGGATTTGGAGAAAGTG
CGACCATCGGTTATAATGGACATCATCTACTCTGGCGAACAGCTTCGCTT
CAAGGACACGGTAAAGAAAGCCCGAGCGTGGCACATTCCACCCGATGTGG
CTTCGTTTCCTCACAGCAGCCGTGCAAGGCGTGCGTCCTTCTCGAGGGTT
CTAAATAAAGGATTGCCGAAGCTGGGCATAGGCAGAGTCGAAGGCGAGCG
AATTGATTGCCCAGCAAACCAGGAACTAGCATTGCGGGAGGAGCAAACTT
AGTAAAAAAACGATTTTGGCAGCTTTCTTAGACATTTCGGTTG
FMO04581.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8078-RA | 1487 | CG8078-RA | 76..1104 | 38..1067 | 4855 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9097321..9098136 | 1059..244 | 3580 | 98.3 | Minus |
| 2R | 25286936 | 2R | 9098189..9098349 | 243..83 | 805 | 100 | Minus |
| 2R | 25286936 | 2R | 9098403..9098450 | 85..38 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:34 has no hits.
FMO04581.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:30 Download gff for
FMO04581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8078-RA | 62..1108 | 23..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:27 Download gff for
FMO04581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8078-RA | 4..1050 | 23..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:57 Download gff for
FMO04581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8078-RA | 62..1108 | 23..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:57 Download gff for
FMO04581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9097317..9098136 | 244..1064 | 98 | <- | Minus |
| 2R | 9098189..9098346 | 86..243 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:30 Download gff for
FMO04581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4985694..4985851 | 86..243 | 100 | <- | Minus |
| arm_2R | 4984822..4985641 | 244..1064 | 98 | <- | Minus |
