FMO04582.5prime Sequence
982 bp (954 high quality bases) assembled on 2008-08-04
> FMO04582.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTGCTCGTGCT
GAATGGTGTGCTGCAGGATGACTGCCCCATGGACACCAACAGCCTGTTCC
TGCAGCATCCCGTCTACAGAGACTACGCCCAGCAGCTGCACTCCATTCAG
GCCAAGTCGGTGGGTCCGGTGGGTCTGCTCTACGTGGGTCAGCGGGAGAT
GGCCGCCTCTGCCCCGCACGACAAGCACGTCAACATCATCGGTGCCGACG
ATGCCACCACCTGTATTATCGTTGTGGTCCGGCACTCCGGATCTGGTGCT
GTGGCCCTGGCGCACTTCGATGGCAGCGGCGTGGACGAGGCTGTGTGCAC
CATGGTGTCGCGGGTTCAGGAGCTGGCCGTCGGCTATCCGGAGGGTCGCA
TCGAGTTGCAGTTGATTGGTGGCTATCGCGATGCCAAGGGATACGGCGAG
GACGTATTCTTCAGCATTATGCAATCATTCCACAATCACCTACTTGAAAT
CGATCTGACGCAGGCTTGCGTGGGCGAGCTAAATACCATGATGCGCGGCG
AGATCAACTGCCCCATCATCTATGGAGTGGGCGTGAACATCAAGACTGGT
GAGATCTTTCCGGCCTCCTTTCCAGACCGAGGACCCGACCGGGAGCTACG
CGATGCTCGCATCTTCATGGGCGCGCAGTTCGGTTCTGGATATATACGAC
TCCTCGCTGGGCATGCTACGCATTGTACCCTTTAACTACGATCCTTTGCG
CGGCGCTGATCTGTGGCTATCACAAACGGATGAGTTTCTGTTGCAGCACC
TGTCCTCCAGTCCAGACGTGGAGCCGCCTCACTTTGCGCTCAGACCCGTG
CCTCCATTAGGTTATACAGGAGAATCAGTTCCCCGCCGTCACCGTTTTCA
GGACAATCGGCGCGCTACTTCCGGCGGGATGACGCCACGGGCTTCTGGTG
GCTGATACAGGATGCAGGCTTTTCTAGACCAT
FMO04582.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP2637-RB | 1450 | CG5473-RB | 359..1288 | 37..963 | 4440 | 98.8 | Plus |
| SP2637-RA | 1340 | CG5473-RA | 249..1178 | 37..963 | 4440 | 98.8 | Plus |
| SP2637-RD | 1876 | CG5473-RD | 359..1273 | 37..948 | 4410 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18642404..18642657 | 290..37 | 1270 | 100 | Minus |
| 2R | 25286936 | 2R | 18641861..18642067 | 679..473 | 1035 | 100 | Minus |
| 2R | 25286936 | 2R | 18642132..18642315 | 472..289 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 18641640..18641797 | 839..682 | 775 | 99.4 | Minus |
| 2R | 25286936 | 2R | 18641465..18641575 | 948..841 | 375 | 95.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:15 has no hits.
FMO04582.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:43 Download gff for
FMO04582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RA | 241..1182 | 29..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:02:58 Download gff for
FMO04582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RB | 347..1288 | 29..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:21 Download gff for
FMO04582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP2637-RA | 241..1182 | 29..967 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:21 Download gff for
FMO04582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18641635..18641796 | 683..843 | 98 | <- | Minus |
| 2R | 18641859..18642067 | 473..682 | 99 | <- | Minus |
| 2R | 18642132..18642314 | 290..472 | 100 | <- | Minus |
| 2R | 18642405..18642661 | 29..289 | 98 | | Minus |
| 2R | 18641459..18641572 | 844..954 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:43 Download gff for
FMO04582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14528964..14529077 | 844..954 | 93 | <- | Minus |
| arm_2R | 14529140..14529301 | 683..843 | 98 | <- | Minus |
| arm_2R | 14529364..14529572 | 473..682 | 99 | <- | Minus |
| arm_2R | 14529637..14529819 | 290..472 | 100 | <- | Minus |
| arm_2R | 14529910..14530166 | 29..289 | 98 | | Minus |
