FMO04583.5prime Sequence
1106 bp (932 high quality bases) assembled on 2008-08-04
> FMO04583.5prime
ACATTATACGAAGTTATCAGTCGACATGGATACCAAGTCCAATGATGACT
CGGCTGGCAGTGACTCGCTGGACAAATCTATGCAAATCAAGTGTGTGATG
GTGGAGACAACGACGACGGGCGACGGAGACTCCACAGTCGGAGATCTGGA
CAACTGCAGCAGGGATTCCGCTGCGGAATCGATTAACAAGGAATCCGGTT
CGATGGAGGGAGCCGGCAAGCAGACGGATCACAAGACTGAAGCTGCGGCG
GGGTCGTGCGGCGAGGGCGACAGTCCGCAGAGCAGTCAATCCCCACCAGA
ACATCCGGCCAGCAAATCGCCCACATCTCCATGCACTGCCTTCGAGACGA
AAGTCAAGCTTATATCACAGAACCTCAAGGAAACCACGCTGGCGGAGAGC
ACCGGCGCCTCCGTATCAGCATCCACATCCACATCAACACCCACGTCCGC
CTCTAGTAGCATCAGCGGCAGCATGCTGGAGTCGCAGCAGACACCCAGCC
AGTCCACCCCCGAAACAACAGATTCCGCCTCGTCGTCCGTGCGCGTGAAA
GAAGGTACGCTTCCATCCGGACGTCAAGGAAAACGACGGCGGGAACTGGA
TGAAAAGAAAGCGACGCTCCATGCATACCAAACGAACCTCCTCGCCCAGC
GGCGCTAACTGTGATGGCATGGAGCTGGACGGTGAGTACGAGGACAACGA
TGACGATGAGCAGGAGGAGGCGGAGGAGGAGTTCGATCTGGCCAAGACAA
TCGCCGAGGTGGAGGATTACCTCAAGCAGCACCCGTTGACATACGTGCAG
CGCGTCGAACAGAAACGGCGAGCGGCTGCGGATGGACTGCTCAGCATCGA
GGATATGCTAAACGAGTCGCGAGGAGGTGGTCACCGAGTAACACGACGAG
ACTTCTTCAGACGCATCAGCCCGAGAATGGCATTGACCGCATTCTGGGCA
AGGAGACCAGGCGGAAAGGTTGATTCCTTCTGCCTACGAGAACCAAGGCG
ACCTCTTCTGGCAATCGGAGGAGTTCATCAGCGCACGTGCCCCCTCCCTG
CTCAGTTCCAAATGAATTGAAAACCACGTCGACGTGACTTGATGCATCCA
GCTGCC
FMO04583.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| A16-RA | 1366 | CG9933-RA | 133..1170 | 24..1054 | 4775 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13020242..13021180 | 959..24 | 4295 | 98.8 | Minus |
| 2L | 23513712 | 2L | 13019849..13019921 | 1043..973 | 235 | 94.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:50 has no hits.
FMO04583.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:40 Download gff for
FMO04583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| A16-RA | 128..1175 | 18..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:02:59 Download gff for
FMO04583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| A16-RA | 123..1170 | 18..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:43 Download gff for
FMO04583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| A16-RA | 128..1175 | 18..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:43 Download gff for
FMO04583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13019863..13019926 | 969..1030 | 93 | <- | Minus |
| 2L | 13020231..13021185 | 18..968 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:40 Download gff for
FMO04583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13019863..13019926 | 969..1030 | 93 | <- | Minus |
| arm_2L | 13020231..13021185 | 18..968 | 98 | | Minus |
