FMO04584.5prime Sequence
1233 bp (1044 high quality bases) assembled on 2008-08-04
> FMO04584.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGGCGATTTAA
GTTATGTGCTTCGCCGAGAGAGGTTATGAAGTACGAAGACTTTATAAAAC
GCATTCGAAAAAGCCTCTACTATGGCGTTGGAACACCAGACACAGAAATG
TCGGTCTCCTTACCCTTTGCGGAGTACGCGGCAGATTTGTTTTCGGAGAC
TCATCGCGGGCATTCTTTGCATCGCCTAAGTTGCGTATCTGCTGCACAAG
TACATGCCACGCCTTGCTCTTTAATTATGGCATTGATATACCTCGATCGC
TTAAACGTCATCGACTCGGGCTATAGCTGCAGAATCACACCACAGCAGCT
GTTTGTTGTGTCACTAATGATTTCCACAAAATTCTACGCGGGCCACGACG
AACGGTTCTATCTGGAAGACTGGGCCAGTGACGCTTGTATGACGGAAGAT
AGGCTCAAGGCAGTCGAGCTCGAATTTCTTTCCGCTATGGGTTGGAATAT
ATACATATCCAATGAGCTATTCTTTGATAAGTTAAGAAACGTTGAACGTT
CTTTGGCTGAACAGCAGGGACTGCGTATAGGTTGGCTCACTTACAGTGAG
CTCGTGCAGTTGCTGCCTAGCCTTGAATGGACGAAATTCCTCGTTAACAG
CCTGTCTGTACTATCTCTAAGCTATGCGGCAAGTATTATAACATTAGCCG
GAGCTTTTTTTATTGCGAGCCAAGTTCCCGGTACGTTATGGCATCGGGAT
GTGGAAACTGCCTCAGATTTCACCATGACAATTAGCAGTCAGGTATCCGT
TTCAAATGCATTAGAGTCCACACCTTTTTATTAATGTCCAAGTATCCTCA
CTTTTACGTAAAACGAGTAACGTGAATGTTGAATTGATGAATCTTGAGAA
GACAAGCTGCGCCAGGGCAAGACTGATAAAATTGAATTATAAGCATCCGC
GCCATCAATCAGTACCTACGCTTTCATTCAATAAGCACCTGTCCACAACT
TGATTTATTGTATGCCCAGGATGGAACAGGATTGGCCTAATTATTAAATC
CGCCCAACAGCGACTACAAAAACAACGAAATCCTTTTCATAACAGGTTAG
ATCCGTACACCTAAAGAGCAACGCTGAAAATGAATTCCGTTATTGGCCAG
CCAACACGAGCAATGCAGGCAGCTCCTGAACATTCGCTGGCGCGCGTCAG
CTAGTGTATACCATATCCGAGACTATAACTCCT
FMO04584.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40191-RC | 1518 | CG40191-RC | 246..1379 | 37..1168 | 5150 | 97.7 | Plus |
| CG40191-RD | 1386 | CG40191-RD | 66..1199 | 37..1168 | 5150 | 97.7 | Plus |
| CG40191-RA | 2923 | CG40191-RA | 66..1199 | 37..1168 | 5150 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1265342..1265963 | 489..1113 | 2610 | 96.3 | Plus |
| 2R | 25286936 | 2R | 1264546..1264841 | 71..366 | 1480 | 100 | Plus |
| 2R | 25286936 | 2R | 1265171..1265294 | 367..490 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 1264458..1264495 | 37..74 | 190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 3180..3275 | 858..756 | 120 | 62.1 | Minus |
FMO04584.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:33 Download gff for
FMO04584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40191-RA | 63..1162 | 34..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:58:13 Download gff for
FMO04584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40191-RD | 83..1182 | 34..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:52 Download gff for
FMO04584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40191-RA | 63..1162 | 34..1133 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:52 Download gff for
FMO04584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1264455..1264493 | 34..72 | 97 | -> | Plus |
| 2R | 1264548..1264841 | 73..366 | 100 | -> | Plus |
| 2R | 1265171..1265293 | 367..489 | 100 | -> | Plus |
| 2R | 1265343..1265986 | 490..1133 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:33 Download gff for
FMO04584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 391088..391126 | 34..72 | 97 | -> | Plus |
| 2RHet | 391181..391474 | 73..366 | 100 | -> | Plus |
| 2RHet | 391804..391926 | 367..489 | 100 | -> | Plus |
| 2RHet | 391976..392619 | 490..1133 | 96 | | Plus |
