FMO04585.5prime Sequence
1240 bp (964 high quality bases) assembled on 2008-08-04
> FMO04585.5prime
GTTATCAGTCGACATGTTTCTGTTCATCAGCCGTCCCACGCGGACGCTGG
GCAACCGAATGCAGGCGGTTCGGGAGCGCTTGGGTCCGGACTTAGCTGAT
CAACTGGACGCTCTGCATCGTAATGTGATGCGGACTGGTCTGGTGTCCAC
ACAGGAGCTGGAGGAGGCATTCCGCAAAACGCGCGACATGGACCACAACC
CGAACCGGTTGAATCTGCTCTGGCTGCTGGGCATCGTGTTCTTCATCATG
GTGGCCACCCCGGTCTTTTATGAGACCATCTCGTTCCTGCTCGGAGTGCG
TTGCTTTCTGCCCAACAACTACTTGGTATGGGAGGCCACCAGGCCCATTA
GTGACTGCGAGTTTTGTAAAGGGGTGAGGGCTCCCCTGATCTTGGCCAAT
CTCACCATGGAGGAGTTTGCACCGCACGCGTACTCCTCAATGCCCATCAT
TGTGAAGAGGGCGGTGGCTCACTGGCCAGCACAAAAGAACCTCAGCTTTG
CCTTCATAAAAGAATTGTACGAAAGTGTCCCGGGAGCAATGGACTCAGAT
TGCCAGTTTCTGCACTTCAACTCTGATCTCAAGTCGCTGAAGCATGTGTT
TTCCATGTCCGCGGAGCGTTCAAATCTTACTCAAGGAGTGCCCTGGTTCG
TGGGCTGGAGTGTCTGCCAGCCGGCCGTCCTGGCGGAGCTCAGAAAGCTG
TATCCCCGCCCGCATTTCCTGCCCTTTCGATGCTGAAAATGCCTCACACG
GACTTTCATATTTAATGGGCTACGAGCAGGGGCTGTGATGCATCTTGATT
ACATTCCCCGCCTGTTGTGGCAAGCTCAGTTTAGTGGCCAACAAGACCTG
GTTTTCTGGCACCCTGCTCCTGAATGTGACCACCAGTGTCAGCCCTTCCT
CTTCTATGTGGGAGCCCGGGAGATGCTGTGGTTTAGTGGAAACACGCATC
TGGTACCATGCCAATTCCACTTCCCAAGGGTCAGTCTTCGCCTCCACCGT
TTCAGTCCGAGTATGGAGCAAGCTTTTTCTAGACCATTCGTTTGGGCGCG
CGGGGGCCCAGGTAGGTGTTCTAACCCTATATCATATCCATAATCATAAA
TCCCACACCTAGCCCTGGGAGATCCCTGTATTGACCTAGGGCTTGGTATC
TCCCTCCCATATAAACGCCCTGTGCGCCACCGAGCGTCCTGGAACACAGT
TCCGAAATGTGAAGTCTGGGAGAGTGGCTACTTTCATTAG
FMO04585.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2211-RB | 1226 | CG2211-RB | 56..1045 | 14..1017 | 4530 | 97.7 | Plus |
| CG2211-RA | 1941 | CG2211-RA | 771..1760 | 14..1017 | 4530 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1333689..1334457 | 793..22 | 3615 | 99.4 | Minus |
| 3L | 28110227 | 3L | 1333443..1333632 | 991..794 | 520 | 92.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:52 has no hits.
FMO04585.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:41 Download gff for
FMO04585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2211-RA | 759..1760 | 3..1017 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:03:00 Download gff for
FMO04585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2211-RA | 703..1704 | 3..1017 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:50 Download gff for
FMO04585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2211-RA | 759..1760 | 3..1017 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:50 Download gff for
FMO04585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1333420..1333632 | 794..1017 | 92 | <- | Minus |
| 3L | 1333689..1334457 | 22..793 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:41 Download gff for
FMO04585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1333420..1333632 | 794..1017 | 92 | <- | Minus |
| arm_3L | 1333689..1334457 | 22..793 | 99 | | Minus |
