FMO04586.5prime Sequence
822 bp (822 high quality bases) assembled on 2008-08-04
> FMO04586.5prime
CTTATACGAAGTTATCAGTCGACATGCCCGTGAAGAATGGCGAATCCGAT
GGCGAAGGCGACGTTTCTGGCGGAGAATCGGAGCACTCGAATTCCAGCCA
GCCACACGACACCTCCGACGAGGAGGAGGCCAACGAATGCGATTCGGATG
ACTCCTCCGAGTTGGATGCCAGTGAAATAGACCGCCGGCGGGCAGAGCAC
ATCGAGGATTTGCTGAGCTTGGAGCGCCAATTTAACGAGTTGCGGGAACA
GTACTACGTCGAGCGCATCAATCTCATCGAACGACAATTGGCCGAGGTGC
GTTCCGGGCGTTCCGAGGAGTTTGTCCAGCCGCAAAAGGAACTGGACAAG
AAGTATCGCACCAGGATCGAGGTGGCGGACGTCCTGCGCAAGTACCGACT
GCAGAATATCGAGCACAAATACCAGTCCGAGGAACAAGCTGCCGTCCAGC
ACTTTGAGAGCGAGAAACACATGGCATTGGACAATCTGCGCGAGGAGTTC
ATGGAGCGCATCCGTCGCCTGGAGGAGGATCGCCACAACGTGGACATCTC
GTGGGCCGACTGGGGCACCGACAAGCGGCAGAGCAAGGTGCGCGGACCGG
GTCGCAAGAAGGCCGTCACCGTCACGGGTCCCTATGTCGTGTACATGCTG
CGCGAGGAGGATATCATGGAGGACTGGACGATTATACGCAAGGCCCTCAA
GCGATCCTCCTCGTCGGCCACCGCTGCTGGCACAGTTACGCCCACTTCCG
GGCGTAAGCGTTAGCCTGTCCGGTTTGCCAGCAAATGGCCAGGAGCTAGC
GGAGCAAGCTTTCTAGACCATT
FMO04586.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Brms1-RA | 1323 | CG4400-RA | 186..962 | 24..803 | 3825 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12908364..12908690 | 784..457 | 1590 | 99.7 | Minus |
| X | 23542271 | X | 12908936..12909180 | 458..214 | 1225 | 100 | Minus |
| X | 23542271 | X | 12909248..12909437 | 213..24 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:50 has no hits.
FMO04586.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:08 Download gff for
FMO04586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4400-RA | 177..969 | 16..812 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:01:24 Download gff for
FMO04586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4400-RA | 153..945 | 16..812 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:39 Download gff for
FMO04586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Brms1-RA | 177..969 | 16..812 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:39 Download gff for
FMO04586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12908340..12908688 | 459..812 | 98 | <- | Minus |
| X | 12908936..12909180 | 214..458 | 100 | <- | Minus |
| X | 12909248..12909446 | 16..213 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:08 Download gff for
FMO04586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12802373..12802721 | 459..812 | 98 | <- | Minus |
| arm_X | 12802969..12803213 | 214..458 | 100 | <- | Minus |
| arm_X | 12803281..12803479 | 16..213 | 98 | | Minus |
