FMO04587.5prime Sequence
1255 bp (962 high quality bases) assembled on 2008-08-04
> FMO04587.5prime
ACATTATACGAAGTTATCAGTCGACATGAGCCTGCCCAGCGCCAGCAACC
ACGCACATGCTGCATCGCCCGTCTACAGCAACAGCAATAACAACAAGTCG
AGCGCGAGCAGCAAAAAGACCTCCTCCAAAAACGATTTGCTACGCTGCGC
CGTGGGACTCCTGCTGAAGCAGAAAAACTACGTGAGCAACGAACGATTTC
GGCGGTCGGATTTTTTGCTGCTGCAAAACAAACAGCAGTTTGCTGTCAAC
AAAATGCTGGATACGGATTTGCACGGTGGCAATAGCTTCACCTTTTCAAA
TGTCCAGGTTATCACCAACAACCAGCACACTGTGGACCAGCAATTTGGTC
GGTTTTCGCAGTTCGTGGAGGCCCAGGCCGAACCGCTGCGTCTGGAAATG
AAGCGCTTTTATGGACCCATGCTGTGCCACTTCTATCTGGATCTGCTCAA
GGCTCGCGAACCGCGTGGCGCTGTGGAGTTGTTGCGCAAATATGCTCACT
TGGTGGCCCCCGTGGATATGTACGATGCACCACCACCTACCAAGATCAAC
GGATGCTCCACTACGGCCAATGAGTCCACTTTTAACATACGCTTCGCAAA
GGAAGCCCAGGACACTGGGGACACGGAACTGGACTACTTTATGCGCCTGG
TGCAAACCCTGAGTGGCTACACACGGCTGGAGGCAGCAGAGTCCGATGAC
ACAGTGGCCCATTTTCGATCTTCGAAATACGAACTACATACTACAGCCGT
AGTTGTTAATAGGATATGCGCTTATCTCCAACGACGGGGCCACGTTTAAT
TATGAACCTACTCTTACACCTGGTTGCATGTCCATATAGTGGAGATGAGC
AGCGCGCCTTTAGTGAGGATCACCTGCCTTGCCTTGACGGATGACCTGGA
AGGTGGAGGATGGGAGAGGACGATGTTGTTTCAAACCAGCAGTAACCCTT
AATACCCGCGGAAAACATAAGACCAAGCAAATCCCTCACTGAAAGTCGAA
CCGAAACCGAACCGCTGAGGAACCAAACTTTTGCTAGAAACAAACTTCAA
CAGGGAGGTAGAAACCGGATGATTCTGCAGAGCTTAATTATATTACAACT
TGAATTAAACGCCTGCTTGGAACACCCTTTAATTCGGCCACTGGAACAGA
TACTTCAGGTTTCTAGTGTGGAATGTGCGCGATTCAGTAATCTCGTGAAC
GTTTTCGGGCTTACTTTCTGCCATTTTGGGAGTATTCACGTGAGATGAGT
GTAAC
FMO04587.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wda-RA | 2744 | CG4448-RA | 89..1212 | 26..1154 | 5010 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23256846..23257781 | 1121..184 | 3830 | 96.7 | Minus |
| 3R | 32079331 | 3R | 23257841..23257999 | 184..26 | 795 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3232..3320 | 9..96 | 144 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1033..1156 | 8..135 | 133 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6925 | 37..123 | 132 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2427 | 37..121 | 130 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2387 | 76..135 | 120 | 66.7 | Plus |
FMO04587.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:16 Download gff for
FMO04587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wda-RA | 89..1227 | 26..1172 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:01:25 Download gff for
FMO04587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wda-RA | 59..1197 | 26..1172 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:20 Download gff for
FMO04587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wda-RA | 89..1227 | 26..1172 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:20 Download gff for
FMO04587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23256801..23257780 | 185..1172 | 96 | <- | Minus |
| 3R | 23257841..23257999 | 26..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:16 Download gff for
FMO04587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19082523..19083502 | 185..1172 | 96 | <- | Minus |
| arm_3R | 19083563..19083721 | 26..184 | 100 | | Minus |
