FMO04588.5prime Sequence
460 bp (460 high quality bases) assembled on 2008-08-04
> FMO04588.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCGTACTAAGC
AGACTGCCCGTAAGTCGACCGGAGGAAAGGCTCCTCGTAAGCAGCTAGCC
ACCAAGGCTGCCCGTAAATCGGCGCCATCCACCGGCGGAGTGAAGAAGCC
CCATCGTTATCGTCCCGGAACTGTGGCTCTTCGTGAGATCCGTCGTTACC
AGAAGTCGACCGAGTTGCTCATCCGCAAGCTGCCCTTCCAGCGTCTGGTT
CGTGAAATCGCTCAGGATTTCAAGACCGATCTGCGTTTCCAGTCGGCTGC
CATCGGTGCCTTGCAGGAAGCATCTGAGGCGTACCTGGTGGGTCTCTTCG
AGGACACCAACTTGTGCGCTATCCACGCCAAGCGCGTGACAATCATGCCT
AAGGACATCCAGTTGGCGCGCCGCATCCGTGGCGAGCGTGCTGCAAGCTT
TCTAGACCAT
FMO04588.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| His3.3B-RE | 2114 | CG8989-RE | 113..522 | 33..442 | 2050 | 100 | Plus |
| His3.3B-RB | 1537 | CG8989-RB | 251..660 | 33..442 | 2050 | 100 | Plus |
| His3.3B-RC | 1519 | CG8989-RC | 233..642 | 33..442 | 2050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9154379..9154663 | 317..33 | 1425 | 100 | Minus |
| 2L | 23513712 | 2L | 5055259..5055541 | 35..317 | 875 | 87.3 | Plus |
| 2L | 23513712 | 2L | 21420186..21420593 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21425250..21425657 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21430312..21430719 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21435356..21435763 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21440244..21440651 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21454445..21454852 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21484738..21485145 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21489887..21490294 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21494932..21495339 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21499977..21500384 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21505030..21505437 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21510075..21510482 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21515119..21515526 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21520166..21520573 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21525009..21525416 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21529852..21530259 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21534693..21535100 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21541210..21541617 | 35..442 | 720 | 78.4 | Plus |
| 2L | 23513712 | 2L | 21459504..21459911 | 35..442 | 705 | 78.2 | Plus |
| 2L | 23513712 | 2L | 21464564..21464971 | 35..442 | 705 | 78.2 | Plus |
| 2L | 23513712 | 2L | 21469607..21470014 | 35..442 | 705 | 78.2 | Plus |
| 2L | 23513712 | 2L | 21474650..21475057 | 35..442 | 705 | 78.2 | Plus |
| 2L | 23513712 | 2L | 21479693..21480100 | 35..442 | 705 | 78.2 | Plus |
| X | 23542271 | X | 9154115..9154247 | 442..310 | 650 | 99.2 | Minus |
| 2L | 23513712 | 2L | 21405669..21405967 | 144..442 | 565 | 79.3 | Plus |
| 2L | 23513712 | 2L | 5055640..5055752 | 326..438 | 355 | 87.6 | Plus |
| 3R | 32079331 | 3R | 1431192..1431302 | 325..435 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:07:30 has no hits.
FMO04588.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:35 Download gff for
FMO04588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| His3.3B-RC | 228..646 | 28..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:59:55 Download gff for
FMO04588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| His3.3B-RB | 239..657 | 28..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:39 Download gff for
FMO04588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| His3.3B-RC | 228..646 | 28..447 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:39 Download gff for
FMO04588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9154111..9154240 | 317..447 | 98 | <- | Minus |
| X | 9154380..9154666 | 27..316 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:35 Download gff for
FMO04588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9048144..9048273 | 317..447 | 98 | <- | Minus |
| arm_X | 9048413..9048699 | 27..316 | 98 | <- | Minus |
