FMO04589.5prime Sequence
1104 bp (985 high quality bases) assembled on 2008-08-04
> FMO04589.5prime
CATTATACGAAGTTATCAGTCGACATGTGTGACGAAGAGGTTGCAGCTTT
AGTGGTCGACAACGGATCCGGCATGTGCAAAGCCGGCTTTGCCGGTGATG
ACGCACCGCGTGCAGTTTTTCCTTCTATTGTCGGCCGTCCACGTCACCAG
GGCGTAATGGTAGGAATGGGACAAAAGGACTCTTATGTCGGCGATGAGGC
ACAGAGCAAACGTGGTATCCTTACCCTGAAGTACCCCATTGAGCACGGTA
TCGTGACTAACTGGGACGACATGGAGAAGATCTGGCATCACACTTTCTAC
AACGAGCTTCGTGTGGCCCCGGAGGAGCACCCCGTCTTGCTTACTGAGGC
TCCTTTGAACCCCAAGGCTAATCGCGAGAAGATGACTCAGATTATGTTTG
AAACCTTCAACACTCCGGCCATGTATGTTGCCATCCAGGCGGTGCTTTCT
CTCTACGCCTCCGGCCGTACCACAGGTATCGTGTTGGACTCCGGCGACGG
TGTCTCCCATACTGTGCCCATTTATGAGGGCTACGCCCTGCCGCACGCCA
TCCTCCGTTTGGATCTAGCCGGTCGCGATTTAACCGACTACCTGATGAAG
ATTCTTACTGAGCGCGGTTACAGCTTCACCACCACCGCCGAGTGTGAAAT
TGTGCGCGACATCAAGGAGAAGCTGTGCTACGTGGCCTTGGACTTCGAGC
AGGAGATGGCCACGGCCGCTTCAAGCTCGTCCCTGGAGAAGTCGTACGAG
TTGCCCGATGGACAGGTCATCACCATCGGAAATGAGCGATTCCGTTGCCC
CGAATCGCTGTTCCAGCCGTCGTTCCTCGGCATGGAGGCCTGTGGCATTC
ACGAGACCACCTACAACTCAATCATGAAGTTGTGACGTCGACATCCCGTA
AGGATCCTGTACGCCAACACTGTGCTGTCCGGCGGCACCAACCATGTACC
CGGGAATCCGCTGACCGCATGCAAGGAAATCACGGCGTTGGCCTCCGTCC
ACCATGAAGAATAAGAATTGTTGCCCCGCCAGACCGCAAGTACTCCTGTT
TGGAATCGGCGGCCTCCTCTCTGGCATTCGCTGTCTCATACTTTTCAGGC
GAAT
FMO04589.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act42A-RA | 1626 | CG12051-RA | 136..1188 | 25..1086 | 4915 | 98.3 | Plus |
| Act5C-RE | 2863 | CG4027-RE | 162..1213 | 25..1085 | 2690 | 84.4 | Plus |
| Act5C-RD | 1928 | CG4027-RD | 162..1213 | 25..1085 | 2690 | 84.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6014385..6015400 | 1045..25 | 4655 | 98.8 | Minus |
| X | 23542271 | X | 5902698..5903713 | 25..1045 | 2465 | 84.6 | Plus |
| 3R | 32079331 | 3R | 15440616..15441538 | 25..951 | 2440 | 85.2 | Plus |
| 2R | 25286936 | 2R | 20944846..20945726 | 67..951 | 2305 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:25:31 has no hits.
FMO04589.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:54 Download gff for
FMO04589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act42A-RA | 136..1193 | 25..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:00:48 Download gff for
FMO04589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act42A-RA | 132..1189 | 25..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:30 Download gff for
FMO04589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act42A-RA | 136..1193 | 25..1094 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:30 Download gff for
FMO04589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6014347..6015400 | 25..1085 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:54 Download gff for
FMO04589.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1901852..1902905 | 25..1085 | 98 | | Minus |
