FMO04592.5prime Sequence
1238 bp (1059 high quality bases) assembled on 2008-08-04
> FMO04592.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCAACAG
CAGCGAACACCGCGACAGCTGCCGGAGCAGCTAAAGACGCCCCGCCAGCG
CCTACAAAGTCGTTGTCCGGCATTGTAAAGCAGGTTCTCTCCGGCGATAC
GGTAGTTATTCGCGCAACTAAGGGTGCCCCGCCTCCGGAGAAACAAATTA
CTTTCTCGCATGTCCTTGCCCCGAAGTTGGCCCGTCGTCCTGGCGCTGGC
GGAGACGAGACCAAGGACGAGCCCTGGGCTTGGGAGTCGCGGGAATTCTT
GCGTAAAAAGTTGATAGGTGTGGAGGTGACTTTCACGTTTGACAAGCCAG
CCAACTCGAACCGGGAGTACGGTTTTGTGTGGATCGGTAAGGACAAGGAA
ACCGGTGAAAATGTGGTCGAGTCGATTGTCCGAGAGGGCCTGGTGTCGGT
CCGTCGAGAGGGACGTCCCACAGCCGAGCAGCAAACACTCATCGAGTTGG
AGGACCAGGCGCGTGCAGCAGGCCGCGGAAAATGGTCGCCCACCGCAAGT
GCCGCCGACAAGGTTCGCAACATCAAGTGGTCCCATGAGAATCCCGCACA
CCTGGTCGACATCTACGGAGGAAACCCCGTGAAGGCGATCATCGAGCACG
TGCGCGATGGATCCACGGTCCGAGCATTCTTGCTGCCGGACTTCCACTAC
ATAACGCTAATGATTTCGGGCATCCGTTGTCCAGGAGTGAAATTAGATGC
TGATGGCAAGCCCGACCTCAGTGTAAAGGTGCCTTTTGCTGACGAAGCTC
GCTACTATGTGGAAACCCGCCTGTTGCAACGCGATGTGGAAATCCGACTG
GAATCGGTTAACAACTCTAACTTCATTGGAACTATTCTGTATCCCAAGGG
AACATTGCAGAATCACTCCTGCGAGAGGGACTTGCCAAGTGTGTGGACTG
GTCAATGGCTGTTATGAAGACAGGCACCGATAACTGCGGGCTGCGAGCGT
TTGCCAAGGAGAGCGTCTTCGCCAATGGCAGGACTACAAGCTAAACTCCT
GCTTTCAACTCGAGGAAAAAGACTTCCTCTGGACAGGGGGTGGAAGTCTT
CATGGCGATGCTATTAATGTACGGTCTTTCCAATGGACAGGTAAGGTGAT
TTCCTCCTGCTCTATCAGCGCCTTACCAGCGCGGTGTGTGGAACGGAGTG
GCGAGGAATTTCTGTCAAGGACCTCACCACAGCGCGAG
FMO04592.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tudor-SN-RB | 3411 | CG7008-RB | 171..1281 | 41..1144 | 5200 | 98.6 | Plus |
| Tudor-SN-RA | 3159 | CG7008-RA | 171..1281 | 41..1144 | 5200 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 261977..262821 | 974..131 | 4175 | 99.9 | Minus |
| 3L | 28110227 | 3L | 264116..264210 | 135..41 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 261570..261749 | 1144..971 | 320 | 91.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:43 has no hits.
FMO04592.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:33 Download gff for
FMO04592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 171..1290 | 41..1152 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:01:26 Download gff for
FMO04592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 169..1288 | 41..1152 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:03 Download gff for
FMO04592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tudor-SN-RA | 171..1290 | 41..1152 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:03 Download gff for
FMO04592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 261978..262818 | 134..973 | 99 | <- | Minus |
| 3L | 264118..264210 | 41..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:33 Download gff for
FMO04592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 261978..262818 | 134..973 | 99 | <- | Minus |
| arm_3L | 264118..264210 | 41..133 | 100 | | Minus |
