FMO04593.5prime Sequence
1025 bp (1007 high quality bases) assembled on 2008-08-04
> FMO04593.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCAGATTCGA
CTATTTTCCGTTTTAACTCATCCATTCTTGATCAGTCAGCGGACAGCAAC
GTATCCAGTTCGAGCTCCAATTCCAGTGTATCCGACTCTTCTGTGGACTC
CCATTCATCCATAGAATCCAATTCGGGACACAATACATCCGTGGAATCTC
AGTCATCCGCGGAATCTGATTCATCCGCTGATTCCCATTCGTCCTTGGAA
CGCCCATCCCCAGTGGAGCGTGATTTATCTGTGGAATCAGACTCATCTTC
AGCCACCAATACCAGCGAATCTTCAGTCGGAGAAGCTTCAAACCAACTGC
AGTCACCGCAAAGCAATAACCCCTTAAATATGGCTAACTTGTCTGTCTCG
ACTGAAGATGCTCATTCGCAGATCAGATCACTTACCCAGGATGTGATCCA
GATGGAAGCAGAGTTGGATCGCATGAATCGCTACTGCGAGGAAGTTGTGG
CACAGATTGACACCTTCGCCACGAGAACCTCAACGCCAACAACTCGTAGA
ATTCGCCGCAGAACGAGTCCAGTAGAAGTGATAGATCTGTCCCATTTGGA
CCGTGCACCACCTGTTCGATCCGCTCGGAATCGTGATCCCGATGCTTTCA
TCGATCTATGCACCCCCGAAGGCCCAAGAAGTCGCACAGTGAATCTTCAC
TCCAAACGACTCCCTCACCATTCTGCCACGTCGGTCAGCCGAAAATGACC
CGGTAGTGGATCTCGACGTTGCGTCGCCACCAAAACGCGTTAATCGCGAC
ATTGATGAGTCCCAAAAAGAGGAGTTATACAAGTGCCCCCATCTGCATGG
ACAGTGTATCGAAGCGCGAGCCAGTGTCACCCAAATGTGGACACGTCTTC
TGCCGCGAATGCATCGAACAGCCATCAAAGCTACGCACAAGTGCCCAATA
TGCAACAAGAGCTGATGGCACGTCATTCTTTCGCATTTACTTGGCAAGCT
TTCTAGAACCATTCGGTTGGGCGCG
FMO04593.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgrn-RA | 1632 | CG10981-RA | 335..1291 | 38..993 | 4610 | 99.1 | Plus |
| dgrn-RD | 1635 | CG10981-RD | 335..1294 | 38..993 | 4570 | 98.8 | Plus |
| dgrn-RB | 1611 | CG10981-RB | 362..1270 | 86..993 | 4370 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5825036..5825444 | 65..473 | 2045 | 100 | Plus |
| 3R | 32079331 | 3R | 5825805..5826235 | 564..993 | 1855 | 97.9 | Plus |
| 3R | 32079331 | 3R | 5825499..5825588 | 474..563 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:33 has no hits.
FMO04593.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:12 Download gff for
FMO04593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgrn-RA | 338..1310 | 33..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:00:57 Download gff for
FMO04593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10981-RA | 338..1310 | 33..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:13 Download gff for
FMO04593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgrn-RA | 328..1300 | 33..1004 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:13 Download gff for
FMO04593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5824942..5824975 | 33..64 | 94 | -> | Plus |
| 3R | 5825036..5825444 | 65..473 | 100 | -> | Plus |
| 3R | 5825499..5825588 | 474..563 | 100 | -> | Plus |
| 3R | 5825805..5826244 | 564..1004 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:12 Download gff for
FMO04593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1650664..1650697 | 33..64 | 94 | -> | Plus |
| arm_3R | 1650758..1651166 | 65..473 | 100 | -> | Plus |
| arm_3R | 1651221..1651310 | 474..563 | 100 | -> | Plus |
| arm_3R | 1651527..1651966 | 564..1004 | 97 | | Plus |
