FMO04594.5prime Sequence
815 bp (815 high quality bases) assembled on 2008-08-04
> FMO04594.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTATCG
GCTCCAAGATTATCAAGCCCGGCGGCTCGGATCCCGATGACTTCGAGAAG
TCCATTGCCCAGGCGTTGGTGGAACTCGAGGCCAACAGCGACCTGAAGCC
CTACCTGCGCGATCTGCACATCACCCGTGCCCGCGAGATCGAGTTCGGCA
GCAAGAAGGCCGTCATCATCTACGTGCCCATTCCACAGCAGAAGGTGTTC
CAGAAGATCCAGATCATCCTGGTCCGCGAGCTGGAGAAGAAGTTCTCGGG
CAAGCACGTCGTCGTGATTGCGGAGCGCAAGATCCTGCCCAAGCCCACGC
GCAAGGCCCGCAACCCCCTCAAGCAGAAGCGTCCACGCTCCAGGACTCTG
ACCGCTGTGTACGACGCCATCCTTGAGGATCTGGTCTTCCCCGCCGAGAT
TGTGGGCAAGCGCATCCGCGTCAAGCTCGACGGCTCCCAGCTGGTCAAGG
TGCACCTGGACAAGAACCAGCAGACCACCATTGAACACAAAGTAAGCATA
AGCATCCTCCACCTCAAAGAAGAGTGCATCGTGTGTGTTAGCAGGCGCGT
ACCCTCGATATTTGGGCCTTCCGTGCCATGGAGCTCAATCTTCGCCAGGG
GACGCAGAACAGTCAGGGCCAATTACTCGTTATTGCAGGCATTAGAAGCC
ATTGCGGTCCTGCATCTCCAAATATTGGCCACAGTTGGTCTTTTAATACA
TCGTTCTTGTGTTTTTCGCTGGCTGTCCTTCCAAAGCCAGGCAAGCTTTC
TAGACCATTCGTTTG
FMO04594.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS7-RE | 813 | CG1883-RE | 38..540 | 41..543 | 2500 | 99.8 | Plus |
| RpS7-RC | 978 | CG1883-RC | 286..788 | 41..543 | 2500 | 99.8 | Plus |
| RpS7-RA | 725 | CG1883-RA | 33..535 | 41..543 | 2500 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30207844..30208427 | 790..207 | 2890 | 99.7 | Minus |
| 3R | 32079331 | 3R | 30208489..30208657 | 209..41 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:31:49 has no hits.
FMO04594.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:59 Download gff for
FMO04594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS7-RA | 22..535 | 34..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 11:01:22 Download gff for
FMO04594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS7-RB | 16..779 | 34..793 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:27 Download gff for
FMO04594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS7-RA | 22..535 | 34..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:27 Download gff for
FMO04594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30207844..30208425 | 209..790 | 99 | <- | Minus |
| 3R | 30208490..30208657 | 41..208 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:59 Download gff for
FMO04594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26033566..26034147 | 209..790 | 99 | <- | Minus |
| arm_3R | 26034212..26034379 | 41..208 | 100 | | Minus |
