FMO04596.5prime Sequence
1206 bp (1022 high quality bases) assembled on 2008-08-04
> FMO04596.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTTTACGAAAG
TGGATTTACGACCCGCAGAACCTACTCCTCGAGGCCGGTGACAACTTCCT
ACGCAGTTACGTACCCCTCGGTCGAGAAAGTAACTCGTGTGTACAAGTCG
AGTTACCCCATCTACTCGAGCTACTCGGTGCCACGCCGCGTCTACGGCGC
AACCCGGGTGGTGACCTCGCCCATCCGCGTGGTAACCTCGCCTGCCCGCG
TGGTGTCCCGCGTCATACACTCACCATCGCCTGTTCGCGTTGTCCGCACG
ACGACCCGAGTGATTTCATCGCCGGAGCGCACCACCTACTCCTACACCAC
GCCATCGACCTACTACAGCCCCTCCTACTTGCCATCGACCTACACTTCGA
CCTACATCCCGACATCGTACACCACGTACACGCCGTCCTACGCCTACAGC
CCGACCACGGACACCCGGGTGTATGCCCCACGCAGTTCGCTGTCGCCGCT
GAGGATCACCCCCTCGCCGGTGAGGGTCATCACCAGCCCGGTTCGCTCTG
TGCCCTCCTATCTGAAGAGGCTGCCGCCTGGTTACGGTGCCCGCGCCCTG
ACCAATTACCTCAATACCGAACCCTTTACCACCTTCTCCGAGGAAACAAG
CCGGATTCGCAACCGCGCGCAATCTCTGATTCGTGACTTGCACACTCCCG
TGGTGCGCCGTGCACGTAGCTGCACTCCCTTTCCCGTCACTGGTTACACC
TATGAGCCGGCCTCGCAACTGGCCCTAGATGCCTATGTGGCCCGTGTCAC
AAATCCTGTCCGTCATATTGCCAAGGAAGTTCACAATATTTCGCACTACC
CCAGGCCAGCAGTGAAATATGTTGATGCCGAGTTGGATCCTAAACCGTCC
ATCTAGAAAATTTTCTGCCCCTAGCCCTGGAGGATCCCCTCGATGTGAGG
GCAAAGGAAGAAACAGCGTCTGCGCCAGGAGCGTCTTCTAACGTTAACGA
AAAGGCTCTCGACGAAGGTTGAACTGAAAAGAAGCGTGCCCAGAAAGCTC
AATGAGCCAGCGTAGGAAGAAGAGGGCTCTCTCAAGGAGGAAAGGGATGC
TGACGGCTGAAGGCGAAGCAGCTGCTGCTAGCATAAGCTGCCAAGATCCC
TATTCTGCGATAAGGCTCTCTGGACTGAACCTGCCGCTCCAAAAAGCACA
CCCGAG
FMO04596.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45076-RH | 2199 | CG45076-RH | 122..1222 | 35..1130 | 4915 | 97.2 | Plus |
| CG45076-RA | 2034 | CG45076-RA | 122..1222 | 35..1130 | 4915 | 97.2 | Plus |
| CG45076-RI | 2109 | CG45076-RI | 122..961 | 35..874 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10772113..10772604 | 630..139 | 2445 | 99.8 | Minus |
| 3R | 32079331 | 3R | 10771337..10771468 | 874..743 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 10771860..10771972 | 743..631 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 10769129..10769304 | 1048..874 | 480 | 89.9 | Minus |
| 3R | 32079331 | 3R | 10777177..10777253 | 111..35 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:37 has no hits.
FMO04596.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:32 Download gff for
FMO04596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fau-RA | 116..1206 | 27..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-04 10:58:20 Download gff for
FMO04596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fau-RA | 103..1193 | 27..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:08 Download gff for
FMO04596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45076-RA | 116..1206 | 27..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:08 Download gff for
FMO04596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10771337..10771467 | 744..874 | 100 | <- | Minus |
| 3R | 10771860..10771972 | 631..743 | 100 | <- | Minus |
| 3R | 10772113..10772604 | 139..630 | 99 | <- | Minus |
| 3R | 10773135..10773161 | 112..138 | 100 | <- | Minus |
| 3R | 10777177..10777259 | 27..111 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:32 Download gff for
FMO04596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6597059..6597189 | 744..874 | 100 | <- | Minus |
| arm_3R | 6597582..6597694 | 631..743 | 100 | <- | Minus |
| arm_3R | 6597835..6598326 | 139..630 | 99 | <- | Minus |
| arm_3R | 6598857..6598883 | 112..138 | 100 | <- | Minus |
| arm_3R | 6602899..6602981 | 27..111 | 96 | | Minus |
