FMO04602.5prime Sequence
1208 bp (1022 high quality bases) assembled on 2008-08-08
> FMO04602.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGCGTGAGCAC
CATCCGCAGCGGTCGGATCTGCCGGCTGGCATTGTGCCTGCTGGTACTGC
TGCCGCTGCTGTATCTGCTGGCCAACTGGAGCGATCACCACAAGCGCGTC
CAGGAGGCGTATCACACGCGCTTCGGCGGACCCAAGTTCGCCCACCAGCG
ATTGGAGGGCAGGCCCAGGGAGGTGCCCAAGCTGGTCGATGGCCTTGGCA
ACTTTGAGCCGAAAGATGTGAAGCCACGTAGCGGGCCTGGCGAGAATGGC
GAGGCCCACAGCCTGTCGCCGGACAAGAAGCACATGTCGGACGCCTCCGA
GATGGAGTACGGCATGAACATCGCCTGCTCCGATGAGATATCGATGCACC
GATCGGTGCGGGACACGCGGCTCGAAGAGTGCCGCCACTGGGACTACCCC
TTCGATCTGCCGCGCACGAGCGTCATCATTGTCTTCCACAACGAGGGCTT
CTCGGTGCTGATGCGCACCGTGCACTCGGTCATCGATCGTTCGCCCACGC
ACATGCTGCACGAGATCATCCTGGTGGATGACTTCTCCGACAAGGAGAAC
CTGCGCAGCCAGCTGGACGAGTATGTGCTGCAGTTCAAGGGGCTGGTCAA
GGTCATCAGGAACAAGGAGCGCGAAGGTCTCATCCGAACGAGATCCAGGG
GAGCCATGGAGGCTACAGGTGAGGTGATCGTCTTCTTGGACGCCCATTGC
GAGGTAAACACCAACTGGCTGCCGCCCTTGCTGGCGCCCATCTACCGGGA
TCGCACTGTGATGACAGTGCCCATTATCGATGGCATTGACCACAAGAACT
TTGAGTACCGGCCGGTTTTATGGCACGGACAACCACTTCCGCGGCCATCT
TCGAATGGGGCATGCTGTAACAAGGAGAACGAGTGCCACGTCGCGAGCAG
CGCCGCCGTGCTCCCAACTCGGACCCTATCGCAAGTCCCACCGCACGCCG
GGCGCCTGTTCGCCATCAATAAGGAGTACTTCCTTGAGCTTGGCGCCTAA
CGATCCCGGGTTCTGCCTGTCTCTGGAGCGGCAAGAACTTTCAATTTGAA
CTTACAGATTCTGCAGGTGGCCGCAGCAATCGAATGGTGCATGCCTCCGC
GTGTCAGCCATCCGCTTTGCCCTCATCGGCAACTGGCTAACAAGTAGAGG
GGTCCCTA
FMO04602.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GalNAc-T2-RC | 3668 | CG6394-RC | 551..1642 | 37..1137 | 4860 | 97 | Plus |
| GalNAc-T2-RB | 3437 | CG6394-RB | 437..1528 | 37..1137 | 4860 | 97 | Plus |
| GalNAc-T2-RA | 2537 | CG6394-RA | 437..1528 | 37..1137 | 4860 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18497942..18498422 | 721..241 | 2405 | 100 | Minus |
| X | 23542271 | X | 18497175..18497505 | 1049..716 | 1240 | 96.1 | Minus |
| X | 23542271 | X | 18499231..18499436 | 242..37 | 1030 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:29:13 has no hits.
FMO04602.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:24 Download gff for
FMO04602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 434..1466 | 34..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:01 Download gff for
FMO04602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RB | 431..1463 | 34..1072 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:52 Download gff for
FMO04602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GalNAc-T2-RA | 434..1466 | 34..1072 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:52 Download gff for
FMO04602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18497175..18497502 | 719..1049 | 96 | <- | Minus |
| X | 18497945..18498421 | 242..718 | 100 | <- | Minus |
| X | 18499232..18499439 | 34..241 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:24 Download gff for
FMO04602.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18391208..18391535 | 719..1049 | 96 | <- | Minus |
| arm_X | 18391978..18392454 | 242..718 | 100 | <- | Minus |
| arm_X | 18393265..18393472 | 34..241 | 99 | | Minus |
