FMO04603.5prime Sequence
1216 bp (1056 high quality bases) assembled on 2008-08-08
> FMO04603.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTAATTAAC
CGGAGCAAAACAAGAGTGAGCCCAACGTCTGAGCGAATCCTCGAGAAAAC
CGAAGCCGAGATGAAGTTCCGTGGCAATGGAAAGCTTTTGTGGAATTTGA
CCAAGAACTCCTTGGCCCAGCAGTCTCCAAATGGGATCGCCAAGAAAGTG
CTGCCCGCTAGCAGCTACAGCACCGTCCAGAAGACCATTCCCTTGGAGCA
GCCGAATCTGCTGAAGTACCACGTCCTGCCGCTGGAGGAAACGCTGAACC
GCTTCATGACCACTGTGGAACCTCTCCTGACGCCTGAGGAGTTTCAACGG
CAAAAGGGAATCACCTCCGAGTTTTTAAAAAAGCAGGGACGCGAACTGCA
GCTGCTCCTGGAAGAAACCGGCAGCAAGGAGAAGAATTGGCTGGCCCACC
GCTGGCTGAAGGCTGCCTATTTGACCTATCGAGATCCAGTCACCGTGTTC
GTGAGTCCTGGCATGACCTTTCCCAAGCAAAACTTCAGGGACTCACGTGC
TTTCGTGGACTATACCGCCAGGGTTATCTATGGACTGGGAGAATTCAACG
ACATGGTGCACGCCAACAAAATTCCGATCGTTAAAATGGGCAAGAACGAG
CTGGACAACAGCCAGTTTGGCAAGGTATTCGGCACATGTCGGATTCCCAG
AAGGGGCACCGACGAGATCGTGTACAATCCCGACTCCGATTATGTGGTGG
TGATCTACAAGAATCACTTCTACCAACTGAAGATATACAGTAAGGAGGGA
AAGCTCATTGCTGCACCATGTCTAGCTGCTCAACTCGAGAATATCGTCTT
GAAGGAAACGCAAGTGGGAGTTCCTTATGGTATTCTGACCACCGACTCCA
GGGACATTGGGCGGAGGCCTACGAATATCTGGTTGAGACTCCTGGCAACC
GGGATGCCCTCAGACCATTCAGGTGCTCTTGTTCACCGTCTCACCTCGAT
GAGGGTACTATCCTAAAGGAAGGCGAAGAGACGACGACTATCCTATCGCT
GATCCATGCAGTGGCAGCAGAATAACAGCGCACGTGATGGACAAGACTAT
TCAGCTGTGTACCAATGACCGTCGGATCACTATGACACCTCGCCCGGCTA
AGCAGCATTGCAAGAGTATGACTTACGGTGTCAAGATGAGGGAAGAACCC
TAGCTCTCGGGCCAAC
FMO04603.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1041-RD | 2267 | CG1041-RD | 68..1147 | 39..1107 | 5025 | 98.4 | Plus |
| CG1041-RA | 2380 | CG1041-RA | 181..1260 | 39..1107 | 5025 | 98.4 | Plus |
| CG1041-RB | 2283 | CG1041-RB | 114..1163 | 69..1107 | 4875 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6372312..6373237 | 1069..149 | 4215 | 98.5 | Minus |
| 3R | 32079331 | 3R | 17139397..17139919 | 404..925 | 795 | 77.2 | Plus |
| 3R | 32079331 | 3R | 6373302..6373382 | 149..69 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:24 has no hits.
FMO04603.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:27 Download gff for
FMO04603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 181..1267 | 39..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:17:16 Download gff for
FMO04603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 181..1267 | 39..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:36 Download gff for
FMO04603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1041-RA | 181..1267 | 39..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:36 Download gff for
FMO04603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6372260..6373236 | 150..1115 | 97 | <- | Minus |
| 3R | 6373302..6373380 | 71..149 | 100 | <- | Minus |
| 3R | 6373814..6373845 | 39..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:27 Download gff for
FMO04603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2197982..2198958 | 150..1115 | 97 | <- | Minus |
| arm_3R | 2199024..2199102 | 71..149 | 100 | <- | Minus |
| arm_3R | 2199536..2199567 | 39..70 | 100 | | Minus |
