FMO04604.5prime Sequence
1218 bp (966 high quality bases) assembled on 2008-08-08
> FMO04604.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTATCTGT
ACAACCTGACCCTGCAGAAGGCCACCGGCGTGACCCACGCGGTCCACGGC
AACTTCTCCGGCGGCAAGCAGCAGGAGGTCCTCCTGTCGCGTGGCAAGTC
GCTGGAGCTACTGCGTCCGGACTCCAACACCGGCAAGGTGCACACCCTGC
TCTCCACGGAGATATTCGGATGCGTTCGCGCCCTGATGGCCTTTCGACTG
ACGGGCGGCACTAAAGATTACATAGTTGTGGGCTCGGACTCGGGACGCAT
CGTGATCCTCGAGTACAATCCCTCCAAGAATGCTCTTGAAAAAGTGCACC
AGGAGACGTTCGGAAAGTCGGGATGTCGCAGGATTGTGCCTGGGCAATAC
TTTGCCATCGATCCTAAAGGAAGAGCCGTGATGATTGGCGCCGTGGAGAA
GCAAAAGCTGGCCTACATCATGAACCGGGACACGCAGGCTCGCCTCACGA
TCTCATCGCCCCTGGAGGCCCACAAATCGAATACACTGACATACCACATG
GTCGGCGTGGATGTGGGCTTCGATAATCCCATGTTCGCCTGCCTAGAGAT
CGACTACGAAGAGGCCGACATGGATCCATCGGGTGACGCCGCCCAGCGCA
CTCAGCAAACGCTGACTTTCTACGAGTTGGATCTCGGCTTAAACCACGTG
GTTCGCAAATACTCGGAGCCCTTGGAAGAGCACGCCAATTTCTTGGTATC
CGTGCCTGGGGGCAACGATGGTCCTTCGGGCGTGCTGATCTGCTCGGAGA
ACTACCTAACGTACAAGAATCTCGGCGATCAGCACGATATCCGCTGTCCC
ATTCCGCGCAGGAGAAACGATCTGGATGATCCCGAACGTGGTATGATCTT
CATCTGCTCGGCCACACATCGCACATAGAGCATGTACTTCTTCCTGCTGC
AGACCGAGCAGGTAGACATCTTTTATGATCACCCTGCAAACGACGATGAT
GTGTCTCGAGATCAAGCTAAAGTACTTCGATACATGCCGCCGCACCTGCC
ATGTGCGTGCTTAGACTGGATCCTGTTCATGCCAGCGAATTGGCACCACT
ATCTATATCAAATCCCTCATTCTGGGTGACTACAATGACATCGGATCAGT
TCGCCCATGCTGAGAGGTACCTTCTCTTTGGCCCGGCCTAAGACCGGGGG
CATTGTGGATACCACGTG
FMO04604.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13900-RC | 4329 | CG13900-RC | 161..1293 | 40..1160 | 5045 | 97.2 | Plus |
| CG13900-RA | 4222 | CG13900-RA | 161..1293 | 40..1160 | 5045 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 832040..832409 | 634..265 | 1850 | 100 | Minus |
| 3L | 28110227 | 3L | 831358..831791 | 1061..632 | 1785 | 97.2 | Minus |
| 3L | 28110227 | 3L | 832715..832941 | 266..40 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:30 has no hits.
FMO04604.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:21 Download gff for
FMO04604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RA | 173..1285 | 36..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:41 Download gff for
FMO04604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RA | 173..1285 | 36..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:55 Download gff for
FMO04604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13900-RA | 156..1268 | 36..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:55 Download gff for
FMO04604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 831316..831790 | 633..1098 | 95 | <- | Minus |
| 3L | 832042..832407 | 267..632 | 100 | <- | Minus |
| 3L | 832715..832946 | 36..266 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:21 Download gff for
FMO04604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 831316..831790 | 633..1098 | 95 | <- | Minus |
| arm_3L | 832042..832407 | 267..632 | 100 | <- | Minus |
| arm_3L | 832715..832946 | 36..266 | 99 | | Minus |
