FMO04605.5prime Sequence
481 bp (481 high quality bases) assembled on 2008-08-08
> FMO04605.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCATGGATC
TGATCAAGAGCAACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAG
GAGATCATTTTGTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGA
GCTGCGTGTGCGCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCC
AGATAAATGTATTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATC
GGACGCCAACGATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAAT
GGATCCATCCGGACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGG
TCGACAAGAAGTTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAG
AAGAACATCAAGAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCA
AACTGTTAGCCATGCAAGCTTTCTAGACCAT
FMO04605.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7945-RA | 1451 | CG7945-RA | 915..1340 | 38..463 | 2130 | 100 | Plus |
| CG7945-RB | 1275 | CG7945-RB | 739..1164 | 38..463 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15521822..15522197 | 463..88 | 1880 | 100 | Minus |
| 3L | 28110227 | 3L | 15522360..15522411 | 89..38 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:54 has no hits.
FMO04605.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:57 Download gff for
FMO04605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7945-RB | 739..1169 | 38..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:08 Download gff for
FMO04605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7945-RC | 1691..2121 | 38..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:26 Download gff for
FMO04605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7945-RB | 739..1169 | 38..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:26 Download gff for
FMO04605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15521817..15522195 | 90..471 | 98 | <- | Minus |
| 3L | 15522360..15522417 | 37..89 | 91 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:57 Download gff for
FMO04605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15514917..15515295 | 90..471 | 98 | <- | Minus |
| arm_3L | 15515460..15515517 | 37..89 | 91 | -> | Minus |
