FMO04606.5prime Sequence
1244 bp (983 high quality bases) assembled on 2008-08-08
> FMO04606.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGGCAACT
AACTTTCGAAGATGATTGCCTGATCCGCGAACTGGATAGTCGATACTACG
GCTTTTTGGATTTGTCCAATTCGAAAAATGCGGAATTAAGGAATCTCGTT
CAGCAGACCATCACAAACTTACAAAACTACATTGCAAATGGTCAGGTTCA
CGAATCAAAGAACAGCAGTGATAATAAAAATGCTATACAAAAGTTTGAGC
CATCAACTCAAGCAGGTGAACATATGGAAAACACATCTTCCCGAAACAAT
GACGACACCAAACCTTTCGAGCAAGATGCCAAGGAAAAGGTGTCCATCAT
TGAAGAAAAACACCAGGATGAACACTACGTTAACGCTCTTTGCAAACTTG
GCCACCTGCATCTTCTTCTTGGCGAATACTCCGAAGCTTTATCAGCGTAC
CAAAAGTATTTAAGATTCCGAGAAAACAATTACTGGACAAATCATGCATT
TATCTATGGAATAGGCGTTGCTTATTTTAAACTTCGGTGCTTTAAATGGG
CCATCAAATCGTTTCAGGAGCTTTTATACCTAAGTCCCAATTTTACATGT
GCAAATGAAGTTCATTTGCGTCTAGGTCTTATGCTAAAACACTGCGGGGA
GTTCCATATTGCCCTAAAACATTTACAATTGGCGCTGCTTTATACATATC
CTTCGACCTTTTCGGAACTTCAGGTCAAATTTCAAATCGCGCATTTGTAC
GAAGTTCAAAACAAGCACAAGGCGGCAAAAGGATGGCTACGAATTTCTTC
TAAATGAGAAAAACATCTCCTTGGAGCTCAAAGCAGATGTTTATCGACAA
TTAGGATGGATGTACCATTGCGTAGAATGCCTAGGCGAAAAAAAGGAACG
TGAAGCAACGCATTTAAATTTTCTACAAAAATCGATCGAAGCTGACCCAA
GAGTGGACATCATTATATTTACTAGGAAGGTGTTACGCCGGCATCAATAA
AGTCATGATGCTTTCCTAGCATATCGCACTCGTTGAAATAGTGAGGGCAT
GCTGAATACTTGGTGCTCAATCGGCGTCTTAAATTCACACGAAATCAACC
ACGAATGCCCATCAGACCTACATATGTGCCTGTGCCAACTGCTTAAGAAC
ATTAGCCTGCTGACACTGCTAACTTTATCAGAGCTGGTTCCGAATATGAC
ACAGAACTAACAGTCCAATGCCCTGCCACTCGTTAAATGTGCAA
FMO04606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Utx-RD | 3591 | CG5640-RD | 114..1220 | 40..1141 | 4985 | 97.5 | Plus |
| Utx-RA | 3609 | CG5640-RA | 114..1220 | 40..1141 | 4985 | 97.5 | Plus |
| Utx-RB | 3446 | CG5640-RB | 146..755 | 537..1141 | 2455 | 95 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10278250..10278598 | 436..88 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 10276392..10276568 | 724..548 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 10275746..10275925 | 1028..852 | 645 | 94.4 | Minus |
| 2L | 23513712 | 2L | 10275983..10276113 | 855..724 | 610 | 99.2 | Minus |
| 2L | 23513712 | 2L | 10277813..10277927 | 549..435 | 575 | 100 | Minus |
| 2L | 23513712 | 2L | 10278649..10278698 | 89..40 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:46 has no hits.
FMO04606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:25 Download gff for
FMO04606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Utx-RA | 114..1225 | 40..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:42 Download gff for
FMO04606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5640-RA | 114..1225 | 40..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:37 Download gff for
FMO04606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Utx-RA | 114..1225 | 40..1146 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:37 Download gff for
FMO04606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10275697..10275922 | 855..1074 | 93 | <- | Minus |
| 2L | 10275984..10276112 | 725..854 | 99 | <- | Minus |
| 2L | 10276392..10276567 | 549..724 | 100 | <- | Minus |
| 2L | 10277814..10277925 | 437..548 | 100 | <- | Minus |
| 2L | 10278250..10278596 | 90..436 | 100 | <- | Minus |
| 2L | 10278649..10278696 | 42..89 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:25 Download gff for
FMO04606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10275984..10276112 | 725..854 | 99 | <- | Minus |
| arm_2L | 10275697..10275922 | 855..1074 | 93 | <- | Minus |
| arm_2L | 10276392..10276567 | 549..724 | 100 | <- | Minus |
| arm_2L | 10277814..10277925 | 437..548 | 100 | <- | Minus |
| arm_2L | 10278250..10278596 | 90..436 | 100 | <- | Minus |
| arm_2L | 10278649..10278696 | 42..89 | 100 | <- | Minus |
