FMO04609.5prime Sequence
1201 bp (1016 high quality bases) assembled on 2008-08-08
> FMO04609.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAAGCTG
TCTTAACATGTTTTCGCCCCGTCGTCGCCTCACACAGAAGATATTGCGCT
AATCCCGGCCAGGCAATGAAGTACTTAAACGTGGCTGAGAAGAACGACGC
CGCCAAAACGATTGCCGGCCTGCTGTCAAATGGCGCAGCACAAAGGCGCG
AAGGCTACTCGGTGTACAACAAGGTCTTCGATTTCGAGGCCCCTGTGCGC
GGTCAGAATGCCAAAATGGTTATGACCTCCGTATCCGGCCACATGATGCA
GCTGGCATTCCAGGTGTCTTACAAAAATTGGAGAACGGTGGATCCGCGCT
CTTTATTCGACGCGCCGGTGAAAAAGGGCGTGGGCTCGGATTATGAGCCT
ATCAAAAGGACCTTGGAACGCGAGGTGCGCGGCTGTCAGGGATTGATTAT
CTGGACGGATTGCGATCGCGAGGGCGAGAACATTGGCTACGAGATTATTG
ATGTGTGTCGCGCTATCAAACCGAATATTTCGGTTTATCGTGCCACTTTC
TCGGAGATTACCACGGTGGCGGTGCGTCGGGCTCTGCAGCAATTGGGGCA
GCCGGACAAAAGGCAGAGCGATGCAGTGGATGTGCGCACGGAACTGGATT
TGCGAACTGGTGCCGCCATCACCCGGTTTCAGACAATGCGCCTACAACGT
CTGTTCCCCGAAAAGATAGCTGATAAGCTCATATCCTATGGAAGCTGCCA
AATTCCCACCCTGGGATTCGTCGCCGAACGGTACAAGGAGATTGAGGCCT
TCGTATCCGAGCCATTTTGGAAGATTAAGGTTCTGCACACAATTGATGAC
TTGACGGTGGAGTTTATTTGGGCCCGAACCGACTCTTCGATAAGGAAGCT
TGTGAAACTATTTGCTCCTCTGCCTGGCCGACCCGATCCTAGAGCGCTCG
TGGAGAGCGTTACCGTTAGCCCAAAACACAAATGGCGCCCAACTCCGCTG
GATACGTTGAATGGAGAGCTTGCTCGAGAACTCAGCTATCTGCAGAGACG
ATGACATAGCGAAAATATAATACCAAGGTTTCATCAGCTATCCGGTACGA
ATCACCAGTCTTCAGGATCGCCCGACCCATAGTGGAATGCACGGTTACGC
GACTGGAACATGGCCATCGGTTGATTGAGTGGGGACCTATCCTCTAAACG
A
FMO04609.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Top3alpha-RA | 3925 | CG10123-RA | 71..1140 | 41..1093 | 4825 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19498459..19499093 | 196..830 | 3175 | 100 | Plus |
| 2L | 23513712 | 2L | 19498238..19498393 | 41..196 | 780 | 100 | Plus |
| 2L | 23513712 | 2L | 19499145..19499323 | 830..1005 | 670 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:31:25 has no hits.
FMO04609.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:01 Download gff for
FMO04609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3alpha-RA | 62..1140 | 29..1093 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:38 Download gff for
FMO04609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3alpha-RA | 51..1129 | 29..1093 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:04 Download gff for
FMO04609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Top3alpha-RA | 62..1140 | 29..1093 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:04 Download gff for
FMO04609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19498229..19498393 | 29..196 | 97 | -> | Plus |
| 2L | 19498460..19499093 | 197..830 | 100 | -> | Plus |
| 2L | 19499146..19499425 | 831..1093 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:01 Download gff for
FMO04609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19498229..19498393 | 29..196 | 97 | -> | Plus |
| arm_2L | 19498460..19499093 | 197..830 | 100 | -> | Plus |
| arm_2L | 19499146..19499425 | 831..1093 | 91 | == | Plus |
