FMO04610.5prime Sequence
1219 bp (1033 high quality bases) assembled on 2008-08-08
> FMO04610.5prime
TTCGTATAGCATACATTTTACGAAGTTATCAGTCGACATGGACAGCTCCA
TGTACTACGCCAGCCAGCGGATTGCTGCCAGCACAGAGGCTAATGTCAGA
GTCATCACCTCGACCATGGCCTCATCTTTGGCCAATGGAACGGCGACGCC
ACGCGCCGACGACGGGGGCGTATCCATGAACAACTTTTACCCGGCGTTGG
TTCAGTGTTTCGGCATCATCATTTGCGGTTACATTGCCGGACGCTTCAAG
ATCATCAGCAATGCGGAAACCAAGGGTCTGGGCACGTTTGTGGGCACCTT
CGCCCTGCCCTCGCTGATCTTCCTGTCCCTGGTCGAGCTCAACTGGAGCG
CTGTCAACTGGAGCTTCCTTCTGGCCATGCTCGTCTCCAAGGCGGTGGTC
TTCTTCGCCGTGCTGATCATCTCGCTGCTGGTCGCCAGGCCCCTGAACTA
CGCTCGCGGCGGCCTGATGGCAATATTCTGCACCCAGAGCAATGACTTCG
CTATCGGCTATCCCATAGTTATGGCTCTTTATAAGGATGTCCATCCGGAA
TATGCCTCGTATCTGTACCTGATGGCTCCTATCTCACTGGCTATTCTAAA
TCCAGTTGGTCTGGTCCTCATGGAGATCTCCAAGATAATCAAGAACAAGG
AGGATGTGACCCGCAATCCACCATTGTGTCCAGAAACTTGTCCCGCGGAA
CAGATGTCCAAACGGAATCGCTGCCTGGGTGAACGGTCTATACTGGTTTT
CAACACCCTAATTGCACTGTTCTTTAACCCGTTGCTGCTGATGACCTTGC
TGGGTGTTGCAGGAGGATTCCTGTTTCCCAACGGTCTGCCCGAAATGGTG
TCCAGTACGTTGCGTGTTCTTGGCCAGAGCTTTTCGGCAACGGCCTTGTT
CCTACTCGGTCTTAAGATCGTAGTGGGACAGGATCCGAACGAAGAGTATA
GGCTTTCTATTGCCTGTGTTCTTATACTGATTAAAATATGTGCTACCGCT
CGTATCGAAAGACGGTAAACATTATGCAGTCTGGCAGAACTTCACGACCC
ACCGAGCTGAGCACTTTGCTTTCTCTACGCACCTTCCAGCTGCCCCGGGC
TTCGTCATTGCACACAGAACAACATGGAGTTGATGATGCCGAACCATGTT
TCGACTCATCGGAACCGGTAGTTTAATCGCCAAATGTATATGCGCGTGAC
AGAAACCTGAGACCACATT
FMO04610.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7510-RB | 4338 | CG7510-RB | 480..1589 | 38..1129 | 5085 | 98.1 | Plus |
| CG7510-RA | 3823 | CG7510-RA | 480..1589 | 38..1129 | 5085 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17626692..17627024 | 658..987 | 1500 | 98.8 | Plus |
| 3L | 28110227 | 3L | 17626102..17626397 | 223..518 | 1465 | 99.7 | Plus |
| 3L | 28110227 | 3L | 17622303..17622493 | 38..228 | 955 | 100 | Plus |
| 3L | 28110227 | 3L | 17626491..17626632 | 517..658 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:01 has no hits.
FMO04610.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:21 Download gff for
FMO04610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7510-RA | 472..1596 | 31..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:06 Download gff for
FMO04610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7510-RA | 470..1594 | 31..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:16 Download gff for
FMO04610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7510-RA | 472..1596 | 31..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:16 Download gff for
FMO04610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17626693..17627024 | 659..987 | 98 | -> | Plus |
| 3L | 17622295..17622493 | 31..228 | 98 | -> | Plus |
| 3L | 17626108..17626397 | 229..518 | 100 | -> | Plus |
| 3L | 17626493..17626632 | 519..658 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:21 Download gff for
FMO04610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17615395..17615593 | 31..228 | 98 | -> | Plus |
| arm_3L | 17619208..17619497 | 229..518 | 100 | -> | Plus |
| arm_3L | 17619593..17619732 | 519..658 | 100 | -> | Plus |
| arm_3L | 17619793..17620124 | 659..987 | 98 | -> | Plus |
