FMO04611.5prime Sequence
1255 bp (1052 high quality bases) assembled on 2008-08-08
> FMO04611.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGAAGGTTC
TATTGACCAAAGCCCAGCACATCCAACCAGTCGTCGCTAGTAGTTCGGAT
GTTTTGGTGATCAAACCAGTCGGTTCCCTGCGAGTGATATCCATCTCAGC
GCCACATAGTGCCTCTACCTACATCCAGCGCAAGTCCTTCCAGCCCGTCT
ACGAGGACATCTTCAAATTACTCATGAAAATCCCAGACAAAGCCCTTACC
CAAAGGGTGATCGACGCGATAAACGAGAGCAATAATAACGATAAGGTCGC
TATCTCCAATCACGGTAAACAATGTTCGTGCGGAGTCCAAAAAGTCGATT
CATCTACACAAACGGATTGGGACACCGAGGAAACGCATATGCCTGGCATT
ACAAATAATTCATGCGAAGCCAAAGGGAATAGGCATAGCCACATGACCAG
TTCAAGTTCCGAACCTATAAAACCGCCAGTAGATCCGACCAAAGTTCCTA
AAAAGCGCGGTAGAAAGCGAAACACCTGCGTGCCACAGGTGGTCAAGCGA
TCAGCGGCTGAGATGGCGCTTAAGGAGCGCGAGGAGAAGCAACTGACGCC
CGTGATCACTAAACGGAAGAAAAGGGATGTCACCCAAGCGCAAAACTTCG
AATCATATCAGATCACGAATAAAACCCCTGTACGCCGAAACTCTACCTTG
TCGGATATATCGTTCAACTCCGATGAGTTGACCCGGGTGGAAAACTTTAT
AAGCGGAAACACCGAGGACCGCATTATACGCATCATGGCCAACGAATTCA
GAAAGTCGCACATAATGTCCGAAGAAGGATTGCTACCCATTCACGAGGAA
ATACTGCACGGCGATGTTTACGGCGTTAAGCGTCAGATATTTGTGTGCTG
CCACGCGAAAATGGACATCAACGAACTACTCACCAGGGACGGCGAGGACT
GCCTGGAACTTGCGCTGACGAACGACACGGGACACCGAGATTGTATCGCT
CATCCTGGACGCTCGCATGATGACCGACCACCTTCTACGAAAACCTCAAA
CACAGCTTCTTCATCTGCGGTGATAAACATATTAAATTATAGAGTTCCAT
TAAGGCTGCTGTTGCCCGATCGAATTTGACAGTTCTCTTCCTGCTAACGA
CGATGATGGTAATCAGGGTTGGCACTTGGCAATGGCCATACCAGGTTCTT
GTGTGTGTGTCGAAGCCACTATCTCTTGTGAATAAGTCTTATAGAACGAC
AGAGA
FMO04611.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5118-RA | 1801 | CG5118-RA | 187..1346 | 38..1202 | 5150 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1172023..1172619 | 634..38 | 2985 | 100 | Minus |
2L | 23513712 | 2L | 1171714..1171913 | 834..635 | 1000 | 100 | Minus |
2L | 23513712 | 2L | 1171403..1171643 | 1078..835 | 960 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:12 has no hits.
FMO04611.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:17 Download gff for
FMO04611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5118-RA | 187..1280 | 38..1136 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:12 Download gff for
FMO04611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5118-RA | 127..1220 | 38..1136 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:49 Download gff for
FMO04611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5118-RA | 187..1280 | 38..1136 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:49 Download gff for
FMO04611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1171347..1171643 | 835..1136 | 94 | <- | Minus |
2L | 1171714..1171913 | 635..834 | 100 | <- | Minus |
2L | 1172023..1172619 | 38..634 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:17 Download gff for
FMO04611.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1171347..1171643 | 835..1136 | 94 | <- | Minus |
arm_2L | 1171714..1171913 | 635..834 | 100 | <- | Minus |
arm_2L | 1172023..1172619 | 38..634 | 100 | | Minus |