Clone FMO04611 Report

Search the DGRC for FMO04611

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:46
Well:11
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5118-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04611.5prime Sequence

1255 bp (1052 high quality bases) assembled on 2008-08-08

> FMO04611.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGAAGGTTC
TATTGACCAAAGCCCAGCACATCCAACCAGTCGTCGCTAGTAGTTCGGAT
GTTTTGGTGATCAAACCAGTCGGTTCCCTGCGAGTGATATCCATCTCAGC
GCCACATAGTGCCTCTACCTACATCCAGCGCAAGTCCTTCCAGCCCGTCT
ACGAGGACATCTTCAAATTACTCATGAAAATCCCAGACAAAGCCCTTACC
CAAAGGGTGATCGACGCGATAAACGAGAGCAATAATAACGATAAGGTCGC
TATCTCCAATCACGGTAAACAATGTTCGTGCGGAGTCCAAAAAGTCGATT
CATCTACACAAACGGATTGGGACACCGAGGAAACGCATATGCCTGGCATT
ACAAATAATTCATGCGAAGCCAAAGGGAATAGGCATAGCCACATGACCAG
TTCAAGTTCCGAACCTATAAAACCGCCAGTAGATCCGACCAAAGTTCCTA
AAAAGCGCGGTAGAAAGCGAAACACCTGCGTGCCACAGGTGGTCAAGCGA
TCAGCGGCTGAGATGGCGCTTAAGGAGCGCGAGGAGAAGCAACTGACGCC
CGTGATCACTAAACGGAAGAAAAGGGATGTCACCCAAGCGCAAAACTTCG
AATCATATCAGATCACGAATAAAACCCCTGTACGCCGAAACTCTACCTTG
TCGGATATATCGTTCAACTCCGATGAGTTGACCCGGGTGGAAAACTTTAT
AAGCGGAAACACCGAGGACCGCATTATACGCATCATGGCCAACGAATTCA
GAAAGTCGCACATAATGTCCGAAGAAGGATTGCTACCCATTCACGAGGAA
ATACTGCACGGCGATGTTTACGGCGTTAAGCGTCAGATATTTGTGTGCTG
CCACGCGAAAATGGACATCAACGAACTACTCACCAGGGACGGCGAGGACT
GCCTGGAACTTGCGCTGACGAACGACACGGGACACCGAGATTGTATCGCT
CATCCTGGACGCTCGCATGATGACCGACCACCTTCTACGAAAACCTCAAA
CACAGCTTCTTCATCTGCGGTGATAAACATATTAAATTATAGAGTTCCAT
TAAGGCTGCTGTTGCCCGATCGAATTTGACAGTTCTCTTCCTGCTAACGA
CGATGATGGTAATCAGGGTTGGCACTTGGCAATGGCCATACCAGGTTCTT
GTGTGTGTGTCGAAGCCACTATCTCTTGTGAATAAGTCTTATAGAACGAC
AGAGA

FMO04611.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5118-RA 1801 CG5118-RA 187..1346 38..1202 5150 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1172023..1172619 634..38 2985 100 Minus
2L 23513712 2L 1171714..1171913 834..635 1000 100 Minus
2L 23513712 2L 1171403..1171643 1078..835 960 97.6 Minus
Blast to na_te.dros performed on 2014-11-28 20:24:12 has no hits.

FMO04611.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:17 Download gff for FMO04611.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5118-RA 187..1280 38..1136 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:12 Download gff for FMO04611.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5118-RA 127..1220 38..1136 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:49 Download gff for FMO04611.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5118-RA 187..1280 38..1136 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:49 Download gff for FMO04611.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1171347..1171643 835..1136 94 <- Minus
2L 1171714..1171913 635..834 100 <- Minus
2L 1172023..1172619 38..634 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:17 Download gff for FMO04611.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1171347..1171643 835..1136 94 <- Minus
arm_2L 1171714..1171913 635..834 100 <- Minus
arm_2L 1172023..1172619 38..634 100   Minus