FMO04614.5prime Sequence
1209 bp (1058 high quality bases) assembled on 2008-08-08
> FMO04614.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTGAGATCGTC
GGTGCCCGTGCAGCTGACAAAACTGCGAAATAGCGCCGAGGCCGTGGCGT
CCATTGCCCGCGAAAAGGGATCCCAAGGTGGCCAAGGACAAAAGCAACAG
GTGGACAAAGAGCTATCCACCATCATGGATGACTTGCAGCGGGATTACGG
GAATTACAAGTACACGGTATACCGGTGCGCCAGTAAATTTGTGGCGCTGC
AAAAGATATTTCACACTGGAAAAATCCCCTACAAGCTGGTTTTGGCCATT
TTGGATCGCCATAACTTGAGTGGTGGCCTGGAACTGATGGTTCCTCCATT
CCAGTTGACCTCCCTGCTGCACGATGTATACTTTGCCTGCGAGAAACTAG
GCCATTTCAACCAGGATGCGAACTATAAACTGGACAGGGCAACCGGGCTG
TTGGCCAACTTCTTCTGGAATGTCTACGATCCGCAACGCAGACACTCCAT
ATCCCTGTTAGAGATCAGGATCACCTTCATACTGCTGTGCAAGCTATATA
GCAGCGATCACCTGGTGGGCGACATCTTTGGCCTGCTGGCCGATCCCAAG
TCGCAGATCATCTCCAGATATGCATTCGAACAGCTCCTAGCCACGCTGAG
CAAGTTACTCAGCTATTTGGGCGAGGCCAAGGCCTATGGCGTCCACAATC
TTCCGTTGGCTATGGAGCAGTGCTTTGCCCGCTGTCCGCATGGCGTTGGT
GGACTGACCGAGCCGCAGTTCCACAAACTCTGGACGGGAGCGGGTGTCCA
GACGAGATTCCTGATCTATGGCAATCTGCTGGCACTGGTGAAACGCATCG
AGGACACCGAGCATTTGATTCACAGTAATTCTTGTGCCGGCTGCCGCAAG
GAGCACATTGTGGGCATACGTTTCCCGGTGTCAGGGGTGTAGGGATATAT
CGTTGTGCCTGCCCTGCTTTGCAGTGGGCTTCGCTGGTGGTCGCCACGAG
CCGGGTCATCGGATGTGCGAGGTCTCGTGGAGATCAGCCGCATTGCGTTG
ACCCGCCACTGGCAGGCTGTGCGCTGCTGTGATGCCGCGCCAAACAAGAG
GAGGACGTTCCGCTTCTGTAATGGCCAGGAAATGGCCCGCCTGGTTCATT
CGGTCATGCCATTACGACGAGTCCGCCATGACCATCAGTCAGAAAAGACG
CCACAGTGT
FMO04614.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dah-RA | 2353 | CG6157-RA | 103..1222 | 37..1142 | 5100 | 97.9 | Plus |
| dah-RB | 2344 | CG6157-RB | 103..1213 | 37..1142 | 4955 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15329010..15329551 | 483..1025 | 2650 | 99.6 | Plus |
| X | 23542271 | X | 15328444..15328672 | 37..265 | 1145 | 100 | Plus |
| X | 23542271 | X | 15328736..15328953 | 266..483 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:56 has no hits.
FMO04614.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:19 Download gff for
FMO04614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dah-RA | 103..1222 | 37..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:37 Download gff for
FMO04614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dah-RA | 99..1218 | 37..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:04 Download gff for
FMO04614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dah-RA | 103..1222 | 37..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:04 Download gff for
FMO04614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15328736..15328952 | 266..482 | 100 | -> | Plus |
| X | 15328444..15328672 | 37..265 | 100 | -> | Plus |
| X | 15329010..15329683 | 483..1142 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:19 Download gff for
FMO04614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15222477..15222705 | 37..265 | 100 | -> | Plus |
| arm_X | 15222769..15222985 | 266..482 | 100 | -> | Plus |
| arm_X | 15223043..15223716 | 483..1142 | 96 | | Plus |
