FMO04615.5prime Sequence
1198 bp (1047 high quality bases) assembled on 2008-08-08
> FMO04615.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGCTTGACA
ACGCTGTGGCAGAACCGCTCGCCTGGCGACCGCCATCTGAGTACATACTT
TTGCTTTGCGGCGGTGCGTCTGCTGCTCGTCTTTGTGCCCCAACTGGGCT
ACGTGCATCCGGATGAGTTCTTCCAGAGCGTGGAGGTAATGACTGGCGAT
CACTTTCGGCTGGAGCATACGCGCACCTGGGAGTTCAACAACTCCCTGCC
GGTGAGGTCAATCGTTCTGCCCTTCGCTCTGCTCCGGATTCCCTGGAGCT
TCTACGAGTTCGTTGCCGAGTGCCTGAAGGCCTGGTGGCAACTGGAGCTG
CTGGGCACCTACGCGTACGTGGTGTTCCCCCGGCTGATTTACACTCTGAT
CTCCTTTAGCAACGACTACTGCTTGTTCCGCATTTGCCGGTTGTACGGAC
TCCGATTCGAGATACGCCTCTTGGCAATGGGCAGCTCCTGGATTCTTCTC
GTCTTCGGCACGCGCACCTTCTCCAACAGCCTGGAAATGGCCATGTGCTC
CTGGCTGCTCTGCTTGGTATCGGAATGCATGTTGCGCACGAACACGGTGG
TGTACAAAAAGGAGTTTCTGGAAGAGAAGTACGACAAGGCGGAGTCCATC
AGCGAAAGGGTGCGCATTTGGAAGCTGAAGAACTCCCTGCCCGCGCACAA
TCTGCAGCACCTAATGGCCATGTCAACCATTTGCGTAGCTGGCGTGTTCA
ATAGACCTACATTCCTGCTCTTTGGAGCACCGATGGTCTTCTTTTGGCTG
CTGCGAGGCATGGGAACCAGAAGCATCACCTTCAGGGACTTTAATCTGCG
CATTGCTCTCTTCTGCTTGTGCGCCTTGCCTGCTCTAGTACTGTTTATAT
TCTGCGACTCACTGTACTACCAGCACTTGACCCTCGGAGAACTGCACATG
ATGCACTTGAGCATCGACAACTTTGTCTTCACGCCCTGAACTTCATAAAG
CCAACCTGGATTCGGCACAGACGGCAGCATGAGTCCACCCATGCTATTTT
CACCTGATGTCAACATGCAATGCTGTCACGTCTTGCCTTGGCCTCCTGGA
GCTCGCCAGTGCTGCCTCGATCCTCGCGATATCAGTGCTGCCGATCAGCA
TGTCATTGATGCGGCTATTGTGTCTCTTCTTTTCTCCCGGATACAAAT
FMO04615.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45069-RB | 3221 | CG45069-RB | 94..1157 | 39..1092 | 5040 | 98.9 | Plus |
| CG45068-RA | 3221 | CG45068-RA | 94..1157 | 39..1092 | 5040 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24412177..24413046 | 195..1059 | 4075 | 99 | Plus |
| 2R | 25286936 | 2R | 24411963..24412120 | 39..196 | 790 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:57:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 4146..4223 | 20..97 | 111 | 60.3 | Plus |
FMO04615.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:50 Download gff for
FMO04615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-RA | 62..1148 | 27..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:23 Download gff for
FMO04615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3419-RB | 62..1148 | 27..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:41 Download gff for
FMO04615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45068-RA | 83..1169 | 27..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:41 Download gff for
FMO04615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24411952..24412119 | 27..195 | 97 | -> | Plus |
| 2R | 24412178..24413096 | 196..1104 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:50 Download gff for
FMO04615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20299475..20299642 | 27..195 | 97 | -> | Plus |
| arm_2R | 20299701..20300619 | 196..1104 | 98 | <- | Plus |
