FMO04618.5prime Sequence
1218 bp (1016 high quality bases) assembled on 2008-08-08
> FMO04618.5prime
TTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGAATTACTACG
TCTGTCTGCACCAGGAGGGTGTTAATAGCATACCCAAGTTAATCGAGAAG
GCCTTCGCGAACAACTATAATGTGGTTTCCACCTCTATCAACGCCAATAT
GTTGCCCTTCGAACCACACGAATCGGATCCCACATATCCGGCCACAATTT
TGAGCGGCAGCGACTGGAATTCCAAGGTGATATTTACCATGTCCGACGTG
AATGTGGACTCGCCGAATGACAAGCTGCGCGAACACGCAAAGGAGGTATT
CATGAGGGACGTGGCCTGGGCGGAGCACCTGCAAAATGTGGGCAACCTGA
TGGTACGGCTGCGCGGTCCGGAAAACGAGAATCTGGCCTCCATTGTGCTG
GCCAAAACAAAGGATGATTTTCCTTCAGGGAACTGGTTCATCCAAGTGCC
CATCACCAATCCAGAACTGGCCACATTCGAGCACCGAAAGGATGCCACCG
CCGAGGAGGTGGCTGAAGCGGAATCGAATGACCCGTGGAACTGGTGGAAT
AACCTGCGCATGGTCACCAAACACAGCACCAAAGTGAAGGTTGTGATAGA
GCTAAACGATGCTGATCGACCCAGCAAGGAAACAGTGCGTCGCTGGTTGG
GCGAACCAATCGAGGCAATCATCATTCCGTCTTCCCTGTTCGTCAGAAAA
CCGCTCCAACTACTGTGTGCTGAAGAAGGAGTGGCAGCTCATCGTCGGGC
ACTTCATCTCGGTACGGGCCAACATCATCATCTCCACAAATCCCAACGAT
AAGGCTTTGTGCCAGTACGCGGATTACGTAATAAGCTAATTAATGATAAC
TGCGATAAGCACATGCTAAACAGCTATGAAAACATGCTGGAAATTCCACT
GCAGCCTCTTTGCGAAAATCTGGACACCTATTACCTTATGAGTATTCGAA
ACTGATCCTGTCAAATACAACTCTATTCAGATGCCGTACAAGCGGCCCTT
TTGGATCGAAGTAAGCCGCTGCCGGAGGCTAAACGAACTGACAGTTTGTA
TGCTTACTGGGTGGAAGACGAGTTCTTTAGCGAGAGCTGTTTCCATGCTG
CCGAGTTAACGAACGCAAAGTTCGCCTCTAAATATAAGAAAGAATCCCAA
TGGCAATCGGAACCTTCCGAATGTTACAGCTTGGCCGATAGATGTTCCCA
TTTTTTCAGAGAACATTG
FMO04618.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| csul-RA | 2013 | CG3730-RA | 96..1285 | 38..1216 | 5030 | 96.1 | Plus |
| csul-RB | 1998 | CG3730-RB | 96..1270 | 38..1216 | 4795 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16265166..16265626 | 413..873 | 2210 | 99.6 | Plus |
| 2R | 25286936 | 2R | 16264747..16265122 | 38..413 | 1880 | 100 | Plus |
| 2R | 25286936 | 2R | 16265686..16265823 | 872..1009 | 445 | 91.4 | Plus |
| 2R | 25286936 | 2R | 16265927..16266028 | 1055..1152 | 220 | 90.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:35:01 has no hits.
FMO04618.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:46 Download gff for
FMO04618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 96..1286 | 38..1218 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:46 Download gff for
FMO04618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 73..1263 | 38..1218 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:16 Download gff for
FMO04618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| csul-RA | 96..1286 | 38..1218 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:16 Download gff for
FMO04618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16264747..16265122 | 38..413 | 100 | -> | Plus |
| 2R | 16265167..16265626 | 414..873 | 99 | -> | Plus |
| 2R | 16265688..16265853 | 874..1040 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:46 Download gff for
FMO04618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12152252..12152627 | 38..413 | 100 | -> | Plus |
| arm_2R | 12152672..12153131 | 414..873 | 99 | -> | Plus |
| arm_2R | 12153193..12153358 | 874..1040 | 92 | -> | Plus |
