FMO04620.5prime Sequence
925 bp (925 high quality bases) assembled on 2008-08-08
> FMO04620.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTGTAAACG
TCTACTCCACAAATGTGACGTCAGAGAATCTCTCGCGCCACGATATGCTA
GCTTGGGTTAACGATTGCCTCCAGTCGCAATTCTCAAAAATCGAGGAGCT
CTGCACAGGTGCAGCTTACTGTCAGTTCATGGACATGCTGTTTCCCAATT
CAGTGCCAGTAAAGCGTGTCAAATTTCGTACCAATCTGGAGCACGAGTAC
ATACAGAACTTCAAGATATTGCAGGCGGGCTTCAAGAAGATGTCTGTGGA
TAAGATTATACCCATTGACAAATTAGTCAAGGGTCGCTTCCAAGACAATT
TCGAGTTTTTGCAATGGTTTAAAAAGTTCTTCGATGCCAATTACGATGGC
AGGGATTACGATGCCAGCGCGGTGCGCGAGGGAGCCCCAATGGGCTTCGG
ATCGGGAGCGGTAAAGTCACTGCCCGGCACGGCGGCAAGCGGCGTGTCCA
GCAGCTATCGACGTGGCCCATCGGCAACGACACGCCCAGCAATGACGTCT
GCAGTGAAGCCCATATCCAAGGTGCTGCCGCGCACGAACAACGCAGCCCC
AGCGAGCAGAATAAACGCCTGTGCCAACAGCACGGGCACGGTCAAGAAGA
ACGACGTGAGCAATTCGGTCAACAATCAACAAATAGAAGAGATGTCAAAT
CAGGTGATGGATATGCGCATAAACCTGGAGGGATTGGAAAAGGAGCGAGA
CTTTTACTTCTCTAAGTTGCGGGATATTGAAATTCTTTGCCAAGAAGCCG
ATGACGCCGAGGCGCATCCGATCATACAAAAGATTTTGGACATCTTATAT
GCGACTGAGGATGGTTTTGCGCCGCCTGACGATGCACCACCAGAGGACGA
GGAGTATGCAAGCTTTCTAGACCAT
FMO04620.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eb1-RE | 1870 | CG3265-RE | 194..1065 | 36..907 | 4360 | 100 | Plus |
| Eb1-RG | 2043 | CG3265-RG | 101..975 | 36..907 | 4320 | 99.7 | Plus |
| Eb1-RA | 1873 | CG3265-RA | 194..1068 | 36..907 | 4320 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 25202057..25202847 | 36..833 | 3130 | 93.9 | Plus |
| 2R | 25286936 | 2R | 6754178..6754438 | 303..563 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 6752841..6752988 | 157..304 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 6754705..6754847 | 564..706 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 6752662..6752786 | 36..160 | 625 | 100 | Plus |
| 2R | 25286936 | 2R | 6754894..6754981 | 699..786 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 6755045..6755118 | 787..860 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 6755183..6755232 | 858..907 | 250 | 100 | Plus |
| 3L | 28110227 | 3L | 7767898..7768147 | 390..141 | 245 | 73.2 | Minus |
| 2R | 25286936 | 2R | 6753251..6753318 | 329..396 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:30:21 has no hits.
FMO04620.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:43 Download gff for
FMO04620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 189..1071 | 30..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:47 Download gff for
FMO04620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 224..1106 | 30..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:28 Download gff for
FMO04620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eb1-RE | 189..1071 | 30..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:28 Download gff for
FMO04620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 25202052..25202852 | 30..840 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:43 Download gff for
FMO04620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 687530..688330 | 30..840 | 93 | | Plus |
