FMO04621.5prime Sequence
694 bp (409 high quality bases) assembled on 2008-08-08
> FMO04621.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACAAAGTG
GGCAAGCACATTCAAAGCGGCATCGGTGGAGCACCCAACGCGGCATTGTC
CACGGCGGCTCTACTGGGTACTCCGCTGGAGGCGACCAATGGTGCTGGCT
CGACCAGCACCACCAATGTATTCAATTCCATCATGAGCTTTCTGCCGGAC
AATCGACCCATCACCTCGCTGCACATCGTCGAGGATTTCGAGCGCTGCCC
GAAGAACTTCAGTGCCATAAGCCGCACCTACGACCAGGATTCGGATGCGG
ACCTATGGCGCGACTACAGCCTGTTTGGACGCCAGAACACACGCTACCTC
TGCCTGTCCAAGTCCGAGGGCCTGCCGGAATACGTGGTGGAAACCCTACA
AGTGATTTCGGAAAAAACGCCCCCCGCCCAGGAATTCCCCAAGTCTCCCG
CACTGCCGAATACCACCCAAAAGCCCTGCGCAAACCGCCATTGATCTACA
AGCTCCCCCAACGCGGACATGTAACCAAGCGGCACCGAACATAATACTCG
CCCCCATTTAAGGAGCCCCCATGGTTTAATTGGGCGGGATTTAAAGAATG
TTTTTTGCTCAAACCACCGATCCTGTGCCTTTTCCCCCTGCAGTGAAAAT
CCCCCCCCCCCCTGCAGTGAAGGCCTGACCCCTAATCCGGGTGA
FMO04621.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7192-RD | 2101 | CG7192-RD | 209..721 | 39..549 | 2050 | 94.4 | Plus |
| CG7192-RB | 1928 | CG7192-RB | 36..548 | 39..549 | 2050 | 94.4 | Plus |
| CG7192-RA | 2126 | CG7192-RA | 234..746 | 39..549 | 2050 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18099506..18099711 | 244..39 | 1030 | 100 | Minus |
| X | 23542271 | X | 18099287..18099443 | 400..244 | 770 | 99.4 | Minus |
| X | 23542271 | X | 18099106..18099222 | 516..401 | 190 | 79.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:33:01 has no hits.
FMO04621.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:33 Download gff for
FMO04621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7192-RA | 230..718 | 32..522 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:02 Download gff for
FMO04621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7192-RA | 250..738 | 32..522 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:53 Download gff for
FMO04621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7192-RA | 230..718 | 32..522 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:53 Download gff for
FMO04621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18099287..18099442 | 245..400 | 99 | <- | Minus |
| X | 18099506..18099715 | 32..244 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:33 Download gff for
FMO04621.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17993320..17993475 | 245..400 | 99 | <- | Minus |
| arm_X | 17993539..17993748 | 32..244 | 98 | | Minus |
