FMO04623.5prime Sequence
1232 bp (1052 high quality bases) assembled on 2008-08-08
> FMO04623.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATCTGCGG
GGAAATCCTCCCAAGAAGGAGGGCAAAATGCGCATTCGGGCCTTTCCGGC
CTCCATGGACGAGAAGTACGTGGAGACCATTTGGGCCAGCTTAAAGAATG
CTATCCAGGAGATACAGAAAAAGAACAACTCCGGACTATCGTTTGAACAA
CTCTACCGGAATGCGTACAACATGGTGCTGCATAAGCACGGCAATAGACT
GTATTACGGTCTGAGGGAGGTCGTCTCAGAACACCTGGAGCACAAGGTGC
GGGCGGATGTGCTGGAGGCTCTGCACAGCAATTTCCTACCCAAGTTAAAC
CAGGCCTGGACAGACCACCAGACATCTATGGTGATGATCCGCGACATACT
CATGTACATGGATAGAGTTTATGTGCAGCAGCGCGAGGTAGACAATGTGT
ACAATTTGGGATTAATTTTGTTCAGGGATCAGGTGGTTCGCTATTCTGAG
ATTCAAAAGGCCCTGCGAGAGAAGTTGCTGGGCATGGTGATGGAGGAACG
TCATGGCGAAGCCATTAACCATCTGGCTATCAAGAATGCTTGCAGTATGC
TGATCACCCTGGGGATTAACTCGCGCACTGTCTACGAAGAGGACTTTGAA
AAGCCCTTCCTTGCGCAATCGGCGGCGTTTTACAAATTCGAGTCGCAGAA
CTTTCTTGCCGAGAACAACGCTGGCGTTTACATCAAGAAAGTGGAAGCGC
GCATCACGGAGGAATCTTCCCGGGCAGCGCTGTATCTCGATAAGGATACG
GAGCCCCGCATTGTGCGCGTGGTCGAAGAAGAGCTGATCAAAAAGCACAT
GCGACCCATTGTTGAAATGGAGAACTCGGGCGTGGTGTACATGATCAAGA
ACTCAAAGACCGAGGATCTGGGCCTGCACATATAAGCTTTTCTTCGCGCC
TGAAGGAGGAGGGTCTCAAGTGATAGCGGACACAATGTCGGCATATCTGC
GAGAGCAAGGACGCATGCTGGTAAGGAAGAGAAACGGCACACGAATCCAT
AACATTCGTGCAGAACTGCTGATCTCAGACCGCTTCGACCAGTTTCTGGG
GCACCCGTTCGCCACGATCGCATATCAAACGTCCATCTCATCCGATTGAA
CGTTTCTGGAACCTATACCATCCGGAAATCTATCGCTAGCTCGAGTGACA
AACGTGGAAAAAGGGTGGCACAGGGGAATTAG
FMO04623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cul3-RE | 3272 | CG11861-RB | 605..1806 | 38..1220 | 5220 | 96.9 | Plus |
| Cul3-RC | 3037 | CG11861-RA | 370..1571 | 38..1220 | 5220 | 96.9 | Plus |
| Cul3-RD | 4332 | CG11861-RC | 881..2082 | 38..1220 | 5220 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15268106..15268760 | 1125..480 | 2660 | 97.6 | Minus |
| 2L | 23513712 | 2L | 15268819..15269205 | 484..98 | 1935 | 100 | Minus |
| 2L | 23513712 | 2L | 15270904..15270965 | 99..38 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:51:55 has no hits.
FMO04623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:12 Download gff for
FMO04623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul-3-RD | 876..2001 | 31..1147 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:44 Download gff for
FMO04623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gft-RB | 600..1725 | 31..1147 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:15 Download gff for
FMO04623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cul3-RD | 876..2001 | 31..1147 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:15 Download gff for
FMO04623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15268082..15268757 | 483..1147 | 97 | <- | Minus |
| 2L | 15268821..15269204 | 99..482 | 100 | <- | Minus |
| 2L | 15270905..15270970 | 31..98 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:12 Download gff for
FMO04623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15268082..15268757 | 483..1147 | 97 | <- | Minus |
| arm_2L | 15268821..15269204 | 99..482 | 100 | <- | Minus |
| arm_2L | 15270905..15270970 | 31..98 | 94 | | Minus |
