Clone FMO04624 Report

Search the DGRC for FMO04624

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:46
Well:24
Vector:pMK33-CFH-BD
Associated Gene/TranscriptLis-1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04624.5prime Sequence

1184 bp (1024 high quality bases) assembled on 2008-08-08

> FMO04624.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAAATGGT
GTTGTCGCAGCGGCAGCGCGAGGAGCTTAACCAAGCGATTGCCGATTATC
TGGGCTCAAATGGCTACGCCGACTCATTGGAGACCTTCCGCAAGGAGGCC
GATCTCAGCACAGAAGTGGAAAAGAAATTTGGCGGACTGTTGGAAAAGAA
GTGGACGTCCGTGATTCGGCTGCAGAAGAAAGTGATGGAACTAGAGGCTA
AGCTCACTGAAGCTGAGAAGGAGGTCATCGAGGGGGCGCCCACAAAGAAC
AAACGGACGCCTGGCGAGTGGATACCTCGGCCGCCAGAGAAGTTCTCCCT
GACCGGTCATCGTGCCAGCATAACGAGGGTAATTTTCCACCCCATCTTTG
CTCTTATGGTTTCCGCATCCGAAGACGCCACCATTAGGATTTGGGACTTC
GAAACTGGCGAGTACGAACGCAGCCTGAAGGGACACACGGACTCTGTGCA
GGATGTCGCATTTGATGCCCAGGGCAAGCTTTTGGCCTCCTGCAGCGCGG
ACTTATCCATCAAATTGTGGGATTTCCAGCAGAGCTACGAGTGTATCAAA
ACTATGCATGGTCACGATCACAATGTCTCGTCGGTGGCCTTTGTGCCGGC
CGGAGATTATGTACTCTCTGCATCCCGGGACCGCACTATTAAAATGTGGG
AGGTGGCCACAGGCTACTGTGTGAAAACCTACACAGGCCATCGAGAGTGG
GTGCGAATGGTGCGAGTGCACATCGAAGGCAGCATCTTTGCCACATGCTC
AAATGATCAGACAATACGTGTTTGGTTGACGAATTCAAAAGACTGCAAGG
TTGAATTACGCGATCATGAGCATACTGTGGAGTGCATTGCCTGGCGCCGG
AAGCCGCAGCCTCTGCGATAAACGAGGCAGCCGGAGCAGACACAGAAGGC
CATCACAGGGCCGTTCTGGCCTCCGGCTCTCGCGACAAACATCGCATTTG
GGACGTGAGCGTCGGCTGTGCTGCTACCCTGATGACATGACATTGGGTGC
GTGATGCATCATCTGTGCAATACTGGTTCGGCACGATGACAAGACATCGG
TGTGGACTGCCCACAGCATGCATGAAACCTTACCGCCTCGCATTCGACTC
AGATCAGCATCGTACGTATTACGGTTAGCCGATT

FMO04624.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Lis-1-RG 1675 CG8440-RG 125..1154 40..1053 4745 98.3 Plus
Lis-1-RF 3292 CG8440-RF 630..1659 40..1053 4745 98.3 Plus
Lis-1-RB 2775 CG8440-RB 113..1142 40..1053 4745 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16182158..16182462 78..382 1525 100 Plus
2R 25286936 2R 16182736..16182914 535..713 895 100 Plus
2R 25286936 2R 16182516..16182673 378..535 790 100 Plus
2R 25286936 2R 16182982..16183120 713..851 695 100 Plus
2R 25286936 2R 16183184..16183362 848..1016 460 91.6 Plus
2R 25286936 2R 16182053..16182090 40..77 190 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:06:09 has no hits.

FMO04624.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:27 Download gff for FMO04624.5prime
Subject Subject Range Query Range Percent Splice Strand
Lis-1-RB 109..1144 32..1057 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:09 Download gff for FMO04624.5prime
Subject Subject Range Query Range Percent Splice Strand
Lis-1-RD 246..1281 32..1057 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:12 Download gff for FMO04624.5prime
Subject Subject Range Query Range Percent Splice Strand
Lis-1-RB 109..1144 32..1057 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:12 Download gff for FMO04624.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16183186..16183407 850..1057 91   Plus
2R 16182737..16182914 536..713 100 -> Plus
2R 16182983..16183118 714..849 100 -> Plus
2R 16182158..16182458 78..378 100 -> Plus
2R 16182049..16182090 32..77 91 -> Plus
2R 16182517..16182673 379..535 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:27 Download gff for FMO04624.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12069554..12069595 32..77 91 -> Plus
arm_2R 12069663..12069963 78..378 100 -> Plus
arm_2R 12070022..12070178 379..535 100 -> Plus
arm_2R 12070242..12070419 536..713 100 -> Plus
arm_2R 12070488..12070623 714..849 100 -> Plus
arm_2R 12070691..12070912 850..1057 91   Plus