FMO04624.5prime Sequence
1184 bp (1024 high quality bases) assembled on 2008-08-08
> FMO04624.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAAATGGT
GTTGTCGCAGCGGCAGCGCGAGGAGCTTAACCAAGCGATTGCCGATTATC
TGGGCTCAAATGGCTACGCCGACTCATTGGAGACCTTCCGCAAGGAGGCC
GATCTCAGCACAGAAGTGGAAAAGAAATTTGGCGGACTGTTGGAAAAGAA
GTGGACGTCCGTGATTCGGCTGCAGAAGAAAGTGATGGAACTAGAGGCTA
AGCTCACTGAAGCTGAGAAGGAGGTCATCGAGGGGGCGCCCACAAAGAAC
AAACGGACGCCTGGCGAGTGGATACCTCGGCCGCCAGAGAAGTTCTCCCT
GACCGGTCATCGTGCCAGCATAACGAGGGTAATTTTCCACCCCATCTTTG
CTCTTATGGTTTCCGCATCCGAAGACGCCACCATTAGGATTTGGGACTTC
GAAACTGGCGAGTACGAACGCAGCCTGAAGGGACACACGGACTCTGTGCA
GGATGTCGCATTTGATGCCCAGGGCAAGCTTTTGGCCTCCTGCAGCGCGG
ACTTATCCATCAAATTGTGGGATTTCCAGCAGAGCTACGAGTGTATCAAA
ACTATGCATGGTCACGATCACAATGTCTCGTCGGTGGCCTTTGTGCCGGC
CGGAGATTATGTACTCTCTGCATCCCGGGACCGCACTATTAAAATGTGGG
AGGTGGCCACAGGCTACTGTGTGAAAACCTACACAGGCCATCGAGAGTGG
GTGCGAATGGTGCGAGTGCACATCGAAGGCAGCATCTTTGCCACATGCTC
AAATGATCAGACAATACGTGTTTGGTTGACGAATTCAAAAGACTGCAAGG
TTGAATTACGCGATCATGAGCATACTGTGGAGTGCATTGCCTGGCGCCGG
AAGCCGCAGCCTCTGCGATAAACGAGGCAGCCGGAGCAGACACAGAAGGC
CATCACAGGGCCGTTCTGGCCTCCGGCTCTCGCGACAAACATCGCATTTG
GGACGTGAGCGTCGGCTGTGCTGCTACCCTGATGACATGACATTGGGTGC
GTGATGCATCATCTGTGCAATACTGGTTCGGCACGATGACAAGACATCGG
TGTGGACTGCCCACAGCATGCATGAAACCTTACCGCCTCGCATTCGACTC
AGATCAGCATCGTACGTATTACGGTTAGCCGATT
FMO04624.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lis-1-RG | 1675 | CG8440-RG | 125..1154 | 40..1053 | 4745 | 98.3 | Plus |
Lis-1-RF | 3292 | CG8440-RF | 630..1659 | 40..1053 | 4745 | 98.3 | Plus |
Lis-1-RB | 2775 | CG8440-RB | 113..1142 | 40..1053 | 4745 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16182158..16182462 | 78..382 | 1525 | 100 | Plus |
2R | 25286936 | 2R | 16182736..16182914 | 535..713 | 895 | 100 | Plus |
2R | 25286936 | 2R | 16182516..16182673 | 378..535 | 790 | 100 | Plus |
2R | 25286936 | 2R | 16182982..16183120 | 713..851 | 695 | 100 | Plus |
2R | 25286936 | 2R | 16183184..16183362 | 848..1016 | 460 | 91.6 | Plus |
2R | 25286936 | 2R | 16182053..16182090 | 40..77 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:09 has no hits.
FMO04624.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:27 Download gff for
FMO04624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lis-1-RB | 109..1144 | 32..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:09 Download gff for
FMO04624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lis-1-RD | 246..1281 | 32..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:12 Download gff for
FMO04624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lis-1-RB | 109..1144 | 32..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:12 Download gff for
FMO04624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16183186..16183407 | 850..1057 | 91 | | Plus |
2R | 16182737..16182914 | 536..713 | 100 | -> | Plus |
2R | 16182983..16183118 | 714..849 | 100 | -> | Plus |
2R | 16182158..16182458 | 78..378 | 100 | -> | Plus |
2R | 16182049..16182090 | 32..77 | 91 | -> | Plus |
2R | 16182517..16182673 | 379..535 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:27 Download gff for
FMO04624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12069554..12069595 | 32..77 | 91 | -> | Plus |
arm_2R | 12069663..12069963 | 78..378 | 100 | -> | Plus |
arm_2R | 12070022..12070178 | 379..535 | 100 | -> | Plus |
arm_2R | 12070242..12070419 | 536..713 | 100 | -> | Plus |
arm_2R | 12070488..12070623 | 714..849 | 100 | -> | Plus |
arm_2R | 12070691..12070912 | 850..1057 | 91 | | Plus |