FMO04626.5prime Sequence
1237 bp (1052 high quality bases) assembled on 2008-08-08
> FMO04626.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGATTCAG
GCTCCCTCATGGACAGATTTTCTGAACTGTCCCATCTGCTGCAATGAATT
CGCGGCCAGCCAGCGATGTCCGGTCAGTCTGGGCTGCGGGCACACCATCT
GCAAGCTATGCCTGACGACCCTCTACAACCGGCAGTGTCCCTTCGATCAG
ACCGTGATTGTCAGTGACATCGACAATTTGCCCATCAACCATGCCTTGCT
CCAGTTGGTCAAGGACTCGGAGCTCCTCGAGCTGGCACCACCACCGCCCA
GTGTGCAGAAGCTGGAGCCGGAGCACCTTAAGTGTTACCAACTGGGTCAG
CGGTGCATCGAGGAGCTGGCTTTGCACTTGAAGTCCTTCCTCAACCTGAA
CGGAAATGGCAATCTTCTAACTCGACCCATGTTACGGAAACTGGTTACTC
TGGTCAACTGCCAGCTGATGGAGGAGGAGGGACGGGTGAGAGCGCTTCGA
GCAGCCAGATCCCTAGGCGAACGCACAGTCACCGAGCTGATCCTGCAGCA
CCAAAATCCCCAGCAGTTGAGCTCAAATCTGTGGGCTGCAGTGCGGACAA
GAGGATGCCAGTTCCTTGGACCCGCCATGCAGGAGGAGGTGCTCAAACTG
GTGCTGCTGGCCTTGGAGGAGGGATCAGCGCTTTCGCGCAAAGTGCTGGT
CATGTTCGTCGTGCAGCGACTAGAGCCGAAGTTTCCCCAGGCCTCCAAGA
CGAGTATCGGACATGTGGTACAGCTGCTCTACCGCGCCAGCTGCTTCAAG
GTGTCCAAGCGGGAGGCGGACTCGTCGTTGATGCAGCTCAAAGAGGATTC
CGTACGTATGACGCCCTACGCCCGGGAGCACGATGCCCAAATCGTTCAGA
TAGCCACCGAGGCGGGTCTGCGAATTGCACCCGGAACATGTTCTTCCCTA
TTTGTATGGCGACGGTGATGCATAAAAAGCCACATGCCGAGCATCATCGA
TAAGCTGCAAACGCCAAGCTTCCTTTGCCGCAATCAGTCCAGGAATTGGT
CATCGCCTTGCAGCGAACAGCGATCTGCCAAGCCTATCCAGTTTGCATCA
TTCATCTGAAAGTACTGGCAATAATTGATTCCTGTGCGAGTGGCCCGTGT
CGGATTGCCTGAAGCCTGATCAGTCGCATTCGGTCGTTGAACTGGTGTAA
CTTCTTTCACAACACCAGAAGTGTCGCCATCAGGGTC
FMO04626.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roq-RB | 3901 | CG16807-RB | 136..1311 | 38..1209 | 5080 | 96.6 | Plus |
| roq-RC | 6179 | CG16807-RC | 136..1311 | 38..1209 | 5080 | 96.6 | Plus |
| roq-RA | 4680 | CG16807-RA | 136..1311 | 38..1209 | 5080 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16376078..16377014 | 1138..197 | 3940 | 96.7 | Minus |
| 3L | 28110227 | 3L | 16377076..16377238 | 200..38 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:35 has no hits.
FMO04626.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:40 Download gff for
FMO04626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 220..1279 | 38..1101 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:18 Download gff for
FMO04626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 220..1279 | 38..1101 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:26 Download gff for
FMO04626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 136..1195 | 38..1101 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:26 Download gff for
FMO04626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16376114..16377010 | 201..1101 | 98 | <- | Minus |
| 3L | 16377076..16377241 | 31..200 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:40 Download gff for
FMO04626.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16369214..16370110 | 201..1101 | 98 | <- | Minus |
| arm_3L | 16370176..16370341 | 31..200 | 97 | | Minus |
