FMO04627.5prime Sequence
1207 bp (1069 high quality bases) assembled on 2008-08-08
> FMO04627.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATGAAAAGG
AACACGAATTGTCGACGAGGGTGGTGAAAAACGAGGAGAACGAGGATGAC
GAGAAGCTCAATGAGTTATCCTTTTGTTTTGTTCGGGGTTCAGATCCACG
AGCTGCCACTTGTCGTAGCAAACTCCAAAACAGGCGATGCAAATTAAACA
AAGAAATAAATAAGGAACTCCGCCTTCGAGCTGGTGCCGAGAATCTATAT
AAGGCCACATCGAATCGCAAACTGCGCGACACAGTTGCCTTGGAATTAAG
CTTTGTCAACTCAAATCTGCAACTGCTGAAGGAGCAACTGGCCGAGTTGA
ATTCGTCGGTGGAAATCTATCAGAGCGAAAGTCACAATGGAATTATGCCC
ATGATACCGCTGGGCCTGAAGGAAACCAAGGAGATCAATTTCATGGAACC
CTTCTCCGACTTCATCCTGGAACACTACAGCGAGGAGCCCTCGATGTACA
TAGATGCCATAGCTGATATGACGGACACGAGACAGGCATCCAAAACACCG
TCACGAGATGCCCTGGGAGTGGCCCTACTTTTCCGCTACTACAACACGCT
GTATTACGTGGAGCGTCGCTTCTTTCCGCCGGATCGTAACCTGGGCGTGT
ACTTCGAGTGGTACGACTCGCTCACGGGAGTTCCCTCGTGCCAGCGGACC
ATCGCGTTCGAGAAAGCCTGCACCCTGTTCAATCTGGGCGGCATATATAC
ACAGATCGGCGCTCGACACGATCGCACGACGGAACGGGGTCTTGACTTGG
CCGTGGATAGTTTTTTACGGGCCGCCGGGGTCTTTCGTCACATCTACGAT
ACGTTCACGAATGCACCATCGATGGACCTGAAGCCACAGGTCCTGGACGT
GCTCGTTTCCCTGATGCTTTCCCAGGCACGAGAATGCCTCTTTGAGAAGC
TTCAGCTGCAGATCGAGGCGATGAGCCACGATTGCCAGCGTTTCGGGATC
TGGCTGGCGAGGCTGCTCAAATATCGCACGAGTACATGAGATGCCACAAG
AATATCAAGCGACGATACGCACAACCTATCTTCCGAATGCTGCGTCTAGT
GCAGTCAAGCCGACCTCTACAAGCATCGCACATTTCTCAGGCCGGACAGA
TGCCAGACGACGTAAGCATCAGGTCAGGTCAAAGGAACCAGAACCCTCAT
CACGGGC
FMO04627.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rhp-RA | 2381 | CG8497-RA | 104..1215 | 37..1137 | 5170 | 98.4 | Plus |
| Rhp-RB | 2536 | CG8497-RB | 259..1370 | 37..1137 | 5170 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15791460..15791902 | 534..976 | 2215 | 100 | Plus |
| X | 23542271 | X | 15791241..15791397 | 380..536 | 785 | 100 | Plus |
| X | 23542271 | X | 15790977..15791106 | 252..381 | 650 | 100 | Plus |
| X | 23542271 | X | 15790742..15790860 | 136..254 | 595 | 100 | Plus |
| X | 23542271 | X | 15790289..15790389 | 37..137 | 505 | 100 | Plus |
| X | 23542271 | X | 15791988..15792068 | 977..1056 | 260 | 96.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:58:56 has no hits.
FMO04627.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:32 Download gff for
FMO04627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rhp-RB | 259..1382 | 37..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:40 Download gff for
FMO04627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rhp-RA | 108..1231 | 37..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:42 Download gff for
FMO04627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rhp-RB | 259..1382 | 37..1146 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:42 Download gff for
FMO04627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15791243..15791396 | 382..535 | 100 | -> | Plus |
| X | 15790289..15790388 | 37..136 | 100 | -> | Plus |
| X | 15790743..15790859 | 137..253 | 100 | -> | Plus |
| X | 15790979..15791106 | 254..381 | 100 | -> | Plus |
| X | 15791462..15791902 | 536..976 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:32 Download gff for
FMO04627.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15685276..15685429 | 382..535 | 100 | -> | Plus |
| arm_X | 15684322..15684421 | 37..136 | 100 | -> | Plus |
| arm_X | 15684776..15684892 | 137..253 | 100 | -> | Plus |
| arm_X | 15685012..15685139 | 254..381 | 100 | -> | Plus |
| arm_X | 15685495..15685935 | 536..976 | 100 | -> | Plus |
