FMO04628.5prime Sequence
1213 bp (1064 high quality bases) assembled on 2008-08-08
> FMO04628.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGAAACGA
CCTCGACGCGCGGCATCCACAAAAAAGATAGTAATTGAAATCTCCGACTC
AGATGAGGAAGTGAATCTTACGGCAGACGACGATTACAGGCCGGAAGAAA
CCAAGAGTCGCATAATAGATCGCGCTGCAGATGCGCAGACCGTCGTGACC
AAACGCCAGCGGTTCCCAACATCCAAAAAAACAGCTGCTGAGGGACCAGC
TCCCAAGAAAAAGCGGGGCGACAAAGAAAAGGCGGACGAGAATGCTTGTC
CCAATGAGAACAATCCGGAATCGGTAGTCCAGGACACACCTTCAACTTCA
AACCAACGGAATGGAGCCGTAGGCACTGAACACAATTCCGAAGCTCCGGC
TCCTAAGAGAAAACGCGCCAGAAAGGATAAGGAGGACTTGAAAACGGCAG
CCAATGAGACTAATCCTGAGAAGGGGGACGTTGTGCCCTCAACAGCAGTG
ACACAACCAAACGATATCGTAGCCAGCTCCTCACACAACAAGTCTTCCAC
TGGACGCAGTTCCTTCTGGGAGCGACGAAAGGTGTGGAACATCGACGAGC
TCCTGGCCGAAACGGAGAGCATACAACCGCAGGCAGCTCGAAATATTGTA
AAGCTCTTCGAGGATGAAAATACCATACCTTTTATTTGCAGGTACCGTCG
AGATCTGGTGGATCACATCGCTCCAGATCGCCTTAGAGATATTCGGAACA
CGTACACAGAGATCGTCGATCTGCGGAAAAGAGCTGAGAATATTATTGGT
AAATTGCAGCGTGAAAACATCATGACTCCGGAAATAAGAGAGGAGCTAAT
GTGCGCCAAGTCCAACGAAGAACTGGAGTTCCTTTATGCCCCCTATAAGC
CCGGCCAGTAAAGGCACTTTGGCGGAACGCGCCAAAGCTTTGGGCTTGCA
GTGTACGCCGATTGTTTACTGTACGGCTCAGCACCTAAGTCAACCTTTCT
GAATTGTGACCGCCGAAATGAGCTTTAGCTACGAGCACTTGTGATGTCTG
GAATCTGCCAAATATATCACAACATCAGCAAAACACAAATGTTTTGGAGA
ATACGCGAATGGCAACGTGCACGGGATTCCTCAGTGCAGCAAGACAAGGA
GCCATCGCTTACTAGTCTTCAGTAAGCAGTCCGTAAGATCCCAACGAAGT
GCGAAAAAAAGAG
FMO04628.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31156-RA | 3193 | CG31156-RA | 155..1287 | 37..1151 | 5130 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22612786..22613284 | 695..197 | 2495 | 100 | Minus |
| 3R | 32079331 | 3R | 22612307..22612727 | 1099..689 | 1540 | 96 | Minus |
| 3R | 32079331 | 3R | 22613342..22613502 | 197..37 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:11:44 has no hits.
FMO04628.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:34 Download gff for
FMO04628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31156-RA | 149..1287 | 29..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:09 Download gff for
FMO04628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31156-RB | 120..1258 | 29..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:36 Download gff for
FMO04628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31156-RA | 149..1287 | 29..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:36 Download gff for
FMO04628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22612293..22612724 | 692..1110 | 96 | <- | Minus |
| 3R | 22612790..22613284 | 197..691 | 100 | <- | Minus |
| 3R | 22613343..22613508 | 32..196 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:34 Download gff for
FMO04628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18438015..18438446 | 692..1110 | 96 | <- | Minus |
| arm_3R | 18438512..18439006 | 197..691 | 100 | <- | Minus |
| arm_3R | 18439065..18439230 | 32..196 | 98 | <- | Minus |
