FMO04629.5prime Sequence
1202 bp (1027 high quality bases) assembled on 2008-08-08
> FMO04629.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCATGTCAG
CAAGCCTCCAGATTCCATTCAGCCACCGCTACAGCCACATTAGCCAAGAG
CACAGCCACCAGAAGGATTGCCACAGCAGCAGCAGCCGCAACAGCAACAG
CGATAGCCGCAGCAACAGCCGCAGCAGCAGCAGCAACGCTGACGCCCGTG
GAGAGCATTGCCGGCAAGACGACGTCCGAGGACTCGGATCCCTATGCCTT
CACCGAGACTGTGGCCGTCACACCACCCATTCTATTCAATGCACAGAAAT
CGAGAGCCCGCCTAACCGACAGCAATAGAGGCAGCAACAAGAGGCAGACG
GCAGCAACAGCTGCGGCCAACAGAAAGGCGAACCTGGTGGCCCAACTGAG
TGTCACAGAGGCAGCAAAGGCGCAGGCGTCTTTGGCAAGCAACAACACAA
CGAATTTCCATCATGTCACGCAATCTCAGAGACAGTCGACGGCGCTGCAG
TTGCAATTGCCACTGCAATCCCAGTCACAGTCGCAGGCCTCGCCGAAGCG
GGCCACCAACGTGTGCATAGTCCGCCCGCAGCAACAGCAGCTGGAGAAGA
TAGCCACCTCGGAGTCCTGCCAGTCGCCGGCAGCACCACCACCGCTTTAC
GCCCACACTCCATCGCTGTGGCAGACGCCGCTGCTCATAGACAATGGGCA
AAAGCAACAGCTCCTCCAGCAGCAGCATCAGCAACCGCAACAGCAACAGT
CCGTTGCTATTGCGTTGGTCAGTCCGCCCACATCGCCCGCCTCATTACCT
TCGCCCACTCTGCCGCCTGCCACCGCTGCAGTGACCGCCATGGTGGCACC
GATTTCCGTATCGCCCAAGGGTGGATTACCTTTGCCGCCATCGAAGTTCC
ATCACACCACACTGGCGCAACATCTGCAGAAGGTGGAGTGCTTGAAAAAA
AAGAAATCCTTGCCACTGGCCTGCCAAACAACACAATACAGCATTTGCCG
ATACAACATGGTGGAGTCGCCTAGAAACGTGTGCAGGAACGAGCTACAAT
CAGACTCATCGCCACCGCCTGATGTTTTCAATACGGACAGTGCAGTCCGC
GCAAGTCCGCGAACTGCTGCTCAGGACATCCACCGCAACGCGTATGACCG
ATTACGGAATACGTCAGTTATCTTCGAGGGCCGCCATGATGCCATGTGTA
AC
FMO04629.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)L1231-RC | 4010 | CG7832-RC | 139..1243 | 36..1122 | 4985 | 97.7 | Plus |
| l(3)L1231-RD | 6007 | CG7832-RD | 139..1243 | 36..1122 | 4985 | 97.7 | Plus |
| l(3)L1231-RA | 4227 | CG7832-RA | 356..1460 | 36..1122 | 4985 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14647889..14648573 | 978..294 | 3425 | 100 | Minus |
| 3R | 32079331 | 3R | 14649010..14649270 | 296..36 | 1305 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6828 | 698..748 | 174 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2395 | 699..748 | 169 | 82 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2407 | 698..748 | 165 | 80.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2390 | 699..749 | 156 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6786 | 698..748 | 156 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6807 | 698..748 | 156 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6850..6900 | 698..748 | 156 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2374 | 699..748 | 151 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6774 | 698..748 | 147 | 76.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2527 | 576..748 | 146 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6795 | 699..748 | 142 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2354..2441 | 665..749 | 135 | 64.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1169 | 665..751 | 135 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2620..2667 | 703..750 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6765 | 701..748 | 132 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2411..2488 | 671..748 | 129 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6753 | 716..748 | 129 | 87.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6877 | 699..749 | 129 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2825..2876 | 698..749 | 125 | 71.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3230..3323 | 651..746 | 124 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1580 | 699..749 | 120 | 70.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1111 | 699..749 | 120 | 70.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2341 | 717..748 | 115 | 84.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6536..6572 | 717..753 | 113 | 78.4 | Plus |
FMO04629.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:12 Download gff for
FMO04629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)L1231-RA | 349..1438 | 31..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:42 Download gff for
FMO04629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)L1231-RA | 336..1425 | 31..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:59 Download gff for
FMO04629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)L1231-RA | 351..1440 | 31..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:59 Download gff for
FMO04629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14647747..14648570 | 297..1103 | 97 | <- | Minus |
| 3R | 14649010..14649275 | 31..296 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:12 Download gff for
FMO04629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10473469..10474292 | 297..1103 | 97 | <- | Minus |
| arm_3R | 10474732..10474997 | 31..296 | 99 | | Minus |
