FMO04630.5prime Sequence
1188 bp (1044 high quality bases) assembled on 2008-08-08
> FMO04630.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCCTCCGGTAT
AAGACCCATCGATGTTCTGCTGGAACGTGCCGGTGTGCGCGGCCACCAGC
GTGCACCGTCCGACTCCAAGGAGTTCCATGAGGTGACCAAACGGGATGCA
CTTCGTCTGCTGGAGCACGATGTGGACCGTCTGCTGGAGACCACTGAGAA
GGCCCGCCAGCCTGCCCTCAAGGCAGAAATGGGTCGTTTCGCCGATCTGT
TCGGACGTTTCATTCAGGAAGAGGGTCCCGCATTGGACTGGAACAAGATT
CAGAAGCTGCCTGAGAATGCTGTGATGAACTACTCGAATCTTAAGTCGCC
CAAGAACGAGCAGAATGAGATCCGCAACATGTTGGATAAATTGGTGGTCA
TCAAGCTGAACGGTGGTTTGGGCACCTCAATGGGTTGCCATGGTCCCAAG
AGTGTGATTCCTGTGCGTTCGGATCTTACTTTCCTGGATCTGACCGTGCA
GCAAATCGAGCATCTCAACAAGACCTACGATGCCAATGTTCCGCTGGTAC
TGATGAACTCCTTTAACACCGACGAGGATACCGAGAAGATCGTGCGCAAG
TACAAAGGATTCCGTGTGCAGATCCACACCTTCAACCAGAGCTGCTTCCC
GCGCATTAGTCGCGAGCACTACCTGCCGGTGGCCAAAGACTTTGATGTCG
AAAAGGATATGGAAGCCTGGTATCCACCTGGACACGGTGACTTCTACGAT
ACCTTCCGCAACTCTGGCCTGCTGAAGAAGTTCATCGAGGAGGGCCGCGA
GTATTGTTTCTTGTCCAACATCGATAACCTGGGCGCCACCGTCGATCTGA
ACATCCTCAATAAGCTGGTGGGCGAGGAGCGGGCCACTACTCCAGTGGAG
TTTGTCATGGAAGGTCACCGACAGACCCGTGCTGACGTTAAGGGTGGTAC
TCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTGCTCAAGTGC
CACCAGAGCATGTGATGACTTTAAGTCGTAAGAACTTCAGTTCTTACCCA
CACATTTGGGCACTGCCAGCCATTGATCGCGTTGCTGACGTACTAAACAA
TGGTATTATTGTGAACACAGACGCTTGAAACGAACCGTCATCACTGGAAC
GCTAGATCGCCATGAGGTCTTTGAGTGGGCCCATACTC
FMO04630.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RA | 2102 | CG4347-RA | 254..1352 | 37..1117 | 4965 | 97.6 | Plus |
| UGP-RE | 2686 | CG4347-RE | 254..1346 | 37..1117 | 4865 | 97.1 | Plus |
| UGP-RC | 2099 | CG4347-RC | 322..1372 | 85..1117 | 4725 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9352882..9353230 | 716..368 | 1745 | 100 | Minus |
| 3L | 28110227 | 3L | 9352601..9352827 | 943..717 | 1040 | 99.1 | Minus |
| 3L | 28110227 | 3L | 9353888..9354074 | 271..85 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 9353738..9353831 | 363..270 | 470 | 100 | Minus |
| 3L | 28110227 | 3L | 9352457..9352545 | 1028..941 | 395 | 98.9 | Minus |
| 3L | 28110227 | 3L | 9357581..9357630 | 86..37 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:08 has no hits.
FMO04630.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:14 Download gff for
FMO04630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 244..1375 | 27..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:20 Download gff for
FMO04630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 252..1383 | 27..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:24 Download gff for
FMO04630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RA | 244..1375 | 27..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:24 Download gff for
FMO04630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9352457..9352543 | 943..1028 | 98 | <- | Minus |
| 3L | 9352602..9352827 | 717..942 | 99 | <- | Minus |
| 3L | 9352882..9353228 | 370..716 | 100 | <- | Minus |
| 3L | 9353729..9353829 | 272..369 | 96 | <- | Minus |
| 3L | 9353888..9354074 | 85..271 | 100 | <- | Minus |
| 3L | 9357583..9357640 | 27..84 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:14 Download gff for
FMO04630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9345557..9345643 | 943..1028 | 98 | <- | Minus |
| arm_3L | 9345702..9345927 | 717..942 | 99 | <- | Minus |
| arm_3L | 9345982..9346328 | 370..716 | 100 | <- | Minus |
| arm_3L | 9346829..9346929 | 272..369 | 96 | <- | Minus |
| arm_3L | 9346988..9347174 | 85..271 | 100 | <- | Minus |
| arm_3L | 9350683..9350740 | 27..84 | 93 | | Minus |
