FMO04631.5prime Sequence
875 bp (875 high quality bases) assembled on 2008-08-08
> FMO04631.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTGCTAATC
AAGGAGTATCGCGTATGCATGCCGCTTACGGTGGAGGAGTACAAGATCGG
ACAGCTTTATATGATAGCGCGCCACAGTCTGGAGCAATCGGAGGAGGGCG
AGGGCGTTGAGGTGGTGGAGAACAAGCCCTGCGAGGATCCCGTTCACGGC
AAGGGCCAGTACACGGAGAAGCACATTCACTTGTCCAGCCGACTGCCCTA
CTGGATCCAGGCCATTTGCCCCCGAGTCTTCTATGTGATAGAGAAATCAT
GGAACTACTATCCGTACACGCTAACAGAATACACGTGTTCCTTTATACCC
AAACTAAATGTGCTCATCAAAACTAAGTACGAGGACAATAATGGCAGCAC
AGAAAACTGTCTGGATCTTACTGAAGATGAGCTCAAAGTTCGAACTGTGG
ATCATTTGGACATAGCGTTCGATGAGGTCAGTGCCAAGCATTATAAGAAG
GAAGAAGATCCCAAGTTCTTCAAATCCGAAAAGACAAACCGTGGTCCATT
GATTGAAGGATGGCGGGAAACGGACAAGCCCATTATGTGCTCCTACAAGG
TGGTCCACGCCAGCTTTGAGGTATGGGGTCTGCAGACCAAAGTGGAGGAC
TTCATTCAGCGCGGAATTCGGGAGATTCTACTACTGGGACACCGGCAGGC
TTTCGCATGGGTGGACGAATGGCATGGCATGACCCTGGAGGATGTTCGCG
CCTACGAGCGTCAAAAGCAGGCCGAGACCAATGAGAAGATTCACAACACA
AGTGGTGGCGCAAATGCAGCGGCCAACGCCAAAGAGGCAAATGATGGCGA
TATTGATGCAAGCTTTCTAGACCAT
FMO04631.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rdgBbeta-RA | 1382 | CG17818-RA | 109..927 | 39..857 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17696231..17696550 | 857..538 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 17697985..17698135 | 238..88 | 755 | 100 | Minus |
| 2R | 25286936 | 2R | 17696612..17696741 | 537..408 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 17697832..17697923 | 327..236 | 460 | 100 | Minus |
| 2R | 25286936 | 2R | 17696801..17696873 | 407..335 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 17698204..17698254 | 89..39 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:57:39 has no hits.
FMO04631.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:41 Download gff for
FMO04631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 102..927 | 31..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:10 Download gff for
FMO04631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 101..926 | 31..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:32 Download gff for
FMO04631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rdgBbeta-RA | 102..927 | 31..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:32 Download gff for
FMO04631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17696801..17696872 | 336..407 | 100 | <- | Minus |
| 2R | 17697825..17697920 | 239..335 | 93 | <- | Minus |
| 2R | 17697985..17698133 | 90..238 | 100 | <- | Minus |
| 2R | 17698204..17698254 | 39..89 | 100 | == | Minus |
| 2R | 17696231..17696550 | 538..857 | 100 | <- | Minus |
| 2R | 17696612..17696741 | 408..537 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:41 Download gff for
FMO04631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13584117..13584246 | 408..537 | 100 | <- | Minus |
| arm_2R | 13583736..13584055 | 538..857 | 100 | <- | Minus |
| arm_2R | 13584306..13584377 | 336..407 | 100 | <- | Minus |
| arm_2R | 13585330..13585425 | 239..335 | 93 | <- | Minus |
| arm_2R | 13585490..13585638 | 90..238 | 100 | <- | Minus |
| arm_2R | 13585709..13585759 | 39..89 | 100 | == | Minus |
