FMO04633.5prime Sequence
1212 bp (1024 high quality bases) assembled on 2008-08-08
> FMO04633.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCTTAATTA
TGAAATACATCGACAGCATAAGCAGATACATGGACTCACATAGTGACTCG
AGGACAAAGGGCTGGCCCATGATGTCGTCCCCATTCCCCACACTGGCCGT
TTGCCTCACATATGTCTATCTGGTCAAGGTGCTGGGACCCCGATTAATGG
AGAACCGAAAGCCTCTGAATCTGCAAAACACTCTAGTCATGTACAATGCC
ATACAGGTTGTATTTAGCGCATGGCTGTTTTATGAGTGCTTGATGGGCGG
CTGGTGGGGCTCGTACAGCTTCCGGTGCCAGCCGGTGGACTACACAGATA
GTCCCACATCCCGGAGAATGGTTCATGCCTGCTGGTGGTACTACTTCTCG
AAGTTTACAGAATTCATGGATACGATTTTCTTCGTGTTGCGCAAGAAGTC
GAGCCAAGTTACCACACTGCACGTCATCCATCACGGCTGCATGCCCATGT
CGGTCTGGTTCGGCGTCAAGTTCACACCGGGTGGTCACAGCACCTTCTTC
GGCCTGCTCAACACCTTCGTCCACATCGTGATGTACACCTACTACATGTT
CTCCGCCATGGGTCCGCAGTACCAGAAATACCTCTGGTGGAAGAAGTACC
TGACCACTCTGCAGATGGTCCAGTTCATCTTGATCATGGTGCACGCCTTC
CAGCTGCTCTTCATCGATTGCAACTACCCGAAGGCGTTCGTCTGGTGGAT
TGGCATGCATGCCGTCATGTTCTTCTTCCTGTTCAACGAGTTCTACAAGG
CAGCCTACAGGAGCCGCATGATGAAAAAGAACGGAGCCCTGGCCAACGGA
CACGCCAAGCCCAATGGCTACTGCAAGAGCATCAACGCCCATGACGATCT
GGCCATGCCACAGACCACGGAGCGACAGCGACAGCGACGCCCGCATCCAA
GCCAACGGGAGCAGCACCCCGCGAGCAATGGACATGCATGGGGTGAGAAC
GTCTACAGCAGTGCCAACGCAGCGCGCACAGGGGTCCACGAGACTGAGCA
ACGGGTATGCACAGCTGCTGACGACGCCTCCAGAGCTGAACAGCGAGAGC
CGAAGCAAGCTTTCTAGACATTCGTGGCCGCCGGGCCCAGTACGGCTAAT
CTAATCTAATCTATCATTCCACTTAGCCTAGGGAGTTCTGCCATGACACT
ATGTGGCGTGTG
FMO04633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31522-RH | 2213 | CG31522-RH | 322..1400 | 38..1095 | 4890 | 98.1 | Plus |
| CG31522-RG | 2352 | CG31522-RG | 461..1539 | 38..1095 | 4890 | 98.1 | Plus |
| CG31522-RA | 2460 | CG31522-RA | 569..1647 | 38..1095 | 4890 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4443902..4444058 | 823..667 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 4444110..4444249 | 669..530 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 4442889..4443056 | 987..823 | 690 | 98.2 | Minus |
| 3R | 32079331 | 3R | 7982801..7983135 | 713..379 | 625 | 79.1 | Minus |
| 3R | 32079331 | 3R | 4444319..4444428 | 533..424 | 550 | 100 | Minus |
| 3R | 32079331 | 3R | 4446425..4446534 | 286..177 | 550 | 100 | Minus |
| 3R | 32079331 | 3R | 4446737..4446823 | 181..95 | 435 | 100 | Minus |
| 3R | 32079331 | 3R | 4446166..4446248 | 367..285 | 415 | 100 | Minus |
| 3R | 32079331 | 3R | 4467642..4467766 | 657..533 | 325 | 84 | Minus |
| 3R | 32079331 | 3R | 4447701..4447758 | 95..38 | 290 | 100 | Minus |
| 3R | 32079331 | 3R | 4444506..4444562 | 424..368 | 285 | 100 | Minus |
| 3R | 32079331 | 3R | 22555685..22555806 | 568..689 | 235 | 79.5 | Plus |
| 3R | 32079331 | 3R | 22559608..22559737 | 669..540 | 230 | 78.5 | Minus |
| 3R | 32079331 | 3R | 22532970..22533076 | 666..560 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:11:58 has no hits.
FMO04633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:39 Download gff for
FMO04633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RA | 562..1649 | 30..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:15:12 Download gff for
FMO04633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RA | 537..1624 | 30..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:43 Download gff for
FMO04633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RA | 562..1649 | 30..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:43 Download gff for
FMO04633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4444322..4444427 | 425..530 | 100 | <- | Minus |
| 3R | 4444506..4444562 | 368..424 | 100 | <- | Minus |
| 3R | 4446166..4446246 | 287..367 | 100 | <- | Minus |
| 3R | 4446425..4446532 | 179..286 | 100 | <- | Minus |
| 3R | 4446740..4446822 | 96..178 | 100 | <- | Minus |
| 3R | 4447701..4447762 | 30..95 | 93 | | Minus |
| 3R | 4442761..4443055 | 824..1098 | 92 | <- | Minus |
| 3R | 4443902..4444057 | 668..823 | 100 | <- | Minus |
| 3R | 4444112..4444248 | 531..667 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:39 Download gff for
FMO04633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 268483..268777 | 824..1098 | 92 | <- | Minus |
| arm_3R | 269624..269779 | 668..823 | 100 | <- | Minus |
| arm_3R | 269834..269970 | 531..667 | 100 | <- | Minus |
| arm_3R | 270044..270149 | 425..530 | 100 | <- | Minus |
| arm_3R | 270228..270284 | 368..424 | 100 | <- | Minus |
| arm_3R | 271888..271968 | 287..367 | 100 | <- | Minus |
| arm_3R | 272147..272254 | 179..286 | 100 | <- | Minus |
| arm_3R | 272462..272544 | 96..178 | 100 | <- | Minus |
| arm_3R | 273423..273484 | 30..95 | 93 | | Minus |
