FMO04634.5prime Sequence
1221 bp (1038 high quality bases) assembled on 2008-08-08
> FMO04634.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACGCAACAGC
CACAATGGGGCATAAGCCTATCGAGGTATTTCGTGATACCCCAGCGAGTG
ATCCTGGCCATCATGGGCTTCTTGGCCATCCTGAATGCCTACACGATGCG
CGTCTGTCTATCACAGGCCATCACGGTGCTGGTGGTCAAGAAGAACTCAA
CGGATGACGATTCTGAGGCGATCTGCGAACCCGATGACATCGACGAGGGA
ACCAGTGTTGGTGGCGATTTCGAATGGTCCGAGGAGCTGCAAGGTTTGAT
CCTGTCCTCATTCTACATCGGTTACATTGTCACCCACATTCCCGGCGGTC
TGCTGGCCGAGAAGTTCGGTGGCAAATGGACCCTGGGCCTTGGCATTCTG
TCCACCGCCGTGTTCACCATGCTAACGCCTTTGGCCATTAACAAGGGTGA
CTCCGACTGGCTGATTGTGACCCGAGTTCTGATGGGTCTGGGCGAGGGAA
CCACCTTCCCCGCTTTGAGTGTCCTCCTAGCTGCTTGGGTTCCGGCCAAC
GAACGTGGAAAGCTCGGTGCTCTGGTGCTGGGTGGCGGTCAAGTGGGTAC
TATCATGGGCAACCTGTTGTCTGGCGTGTTTATAGACGCCTATGGTTGGG
AGTTTGTCTTCTACTTCTTCGGGGGTCTGGGTGTTGTCTGGTTTGCCATC
TTTATGTTCCTCTGCTACAGCGATCCCACGTCGCATCCCTTCATCAAGCC
CAGCGAGCGCGAGTATCTGGTCAAGGAGATTGGAACCATTAGCCGCAACG
AGGACCTGCCCCCCACTCCCTGGAAGGCCATCCTCACCAACCTGCCCATG
TTTGCCCTGGTGGCCGCCCAGATTGGTCACGATTGGGGCTTCTACATCAT
GGTGACGGATCTGCCGAAGTACATGGCCGACGTTCTTCAGTTCTCGATCA
AGGCCAACGGTCTTTACTCCTCGCTGCCCTACGTCATGATGTGATCGTTT
CGTGGGCAGTGCTTTGTGCCGATTGATGATCCGCCGTGGCCGTGTTGAGC
ACCACAAACACCGAAGTGATGACTGATCTGCTGCTTCGGTCCGCCTCTTC
ATGGTGGGGGCTTCTAGCGGCTGCAATCGTCCTCGCGTGGGTCTCTCCCA
CTTGCATGGCTGATGGGCTATCATATCTGCCGGCCTGAACCTGATCCTGA
AATGGATCGAACATATGCCCC
FMO04634.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dmGlut-RA | 2426 | CG5304-RA | 341..1496 | 34..1168 | 5105 | 97.2 | Plus |
| CG9254-RA | 1684 | CG9254-RA | 211..356 | 50..195 | 280 | 79.5 | Plus |
| CG9254-RA | 1684 | CG9254-RA | 1039..1145 | 878..984 | 190 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12032131..12032577 | 257..703 | 2235 | 100 | Plus |
| 2L | 23513712 | 2L | 12032646..12033008 | 704..1062 | 1520 | 98.4 | Plus |
| 2L | 23513712 | 2L | 12031893..12032073 | 78..258 | 905 | 100 | Plus |
| 2L | 23513712 | 2L | 13596831..13596976 | 195..50 | 280 | 79.5 | Minus |
| 2L | 23513712 | 2L | 12027778..12027821 | 34..77 | 205 | 97.7 | Plus |
| 2L | 23513712 | 2L | 13596042..13596148 | 984..878 | 190 | 78.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:46:34 has no hits.
FMO04634.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:32 Download gff for
FMO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dmGlut-RA | 333..1445 | 28..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:40 Download gff for
FMO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)01810-RA | 331..1443 | 28..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:43 Download gff for
FMO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dmGlut-RA | 333..1445 | 28..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:43 Download gff for
FMO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12027782..12027821 | 38..77 | 100 | -> | Plus |
| 2L | 12031893..12032071 | 78..256 | 100 | -> | Plus |
| 2L | 12032131..12032577 | 257..703 | 100 | -> | Plus |
| 2L | 12032646..12033080 | 704..1124 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:32 Download gff for
FMO04634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12032646..12033080 | 704..1124 | 95 | | Plus |
| arm_2L | 12027782..12027821 | 38..77 | 100 | -> | Plus |
| arm_2L | 12031893..12032071 | 78..256 | 100 | -> | Plus |
| arm_2L | 12032131..12032577 | 257..703 | 100 | -> | Plus |
