FMO04635.5prime Sequence
1037 bp (1037 high quality bases) assembled on 2008-08-08
> FMO04635.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGGATATCATG
AACATCGACAGTATCATCTCGCGCCTGCTGGAGGTGCGCGGTGCACGACC
GGGAAAGAATGTTCAGCTATCAGAGAGCGAGATCCGCAGCCTGTGCCTCA
AGTCCCGCGAGATATTCCTGTCGCAGCCCATACTCCTGGAGCTGGAGGCA
CCGCTGAAGATCTGCGGCGACATACACGGACAATATTATGACCTCTTGCG
CCTGTTCGAATACGGCGGCTTTCCGCCCGAGTCAAACTACCTGTTCCTGG
GCGACTATGTCGATCGCGGCAAGCAATCCCTGGAGACGATATGCCTGCTG
CTGGCCTACAAGATCAAGTACGCGGAGAACTTCTTCTTGCTGCGCGGCAA
CCATGAGTGCGCCAGCATCAATCGCATCTACGGGTTCTATGACGAATGTA
AACGTCGCTACACCATCAAGCTGTGGAAAACTTTCACGGACTGCTTCAAC
TGCCTGCCGGTGGCCGCCATCGTGGATGAGAAGATCTTCTGCTGCCACGG
TGGCCTGAGTCCAGATCTGTCGTCCATGGAGCAGATACGACGCATCATGC
GTCCCACAGACGTGCCCGATCAGGGACTGCTGTGCGATCTGCTGTGGTCG
GATCCGGATAAGGATACCATGGGCTGGGGCGAGAATGATCGCGGCGTGAG
CTTCACATTTGGAGCAGAGGTTGTGGGTAAATTTTTACAGAAGCACGAAT
TTGACCTGATCTGTCGGGCTCATCACGTAGTGGAGGACGGTTATGAGTTC
TTCGCCAAACGTCAGCTGGTGACGCTCTTCTCGGCGCCCAACTACTGCGG
GGAATTCGACAACGCGGGTGCCATGATGTCCGTGGACGACACATTGATGT
GCTCCTTTCAGATATTGAAACCCGCCGACAGCGACGATTTGTTTATCCCA
ACTTTGGCAGCTCAGACGTCCTTTGACACCGCCACGCGGAGCTAACATAA
AAACAGAAAAAGCAGCTTTCTAGACATTCGTTGGCGC
FMO04635.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 390..1369 | 36..1011 | 4770 | 99.4 | Plus |
| Pp1alpha-96A-RA | 2221 | CG6593-RA | 390..1369 | 36..1011 | 4770 | 99.4 | Plus |
| Pp1-87B-RA | 2203 | CG5650-RA | 242..1124 | 48..930 | 2375 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12424794..12425676 | 930..48 | 2375 | 84.6 | Minus |
| X | 23542271 | X | 15359466..15360298 | 907..75 | 1885 | 81.8 | Minus |
| 3R | 32079331 | 3R | 24518843..24519194 | 84..435 | 1760 | 100 | Plus |
| 3R | 32079331 | 3R | 24519595..24519883 | 433..721 | 1445 | 100 | Plus |
| X | 23542271 | X | 10406407..10406701 | 139..433 | 755 | 83.7 | Plus |
| 3R | 32079331 | 3R | 24519938..24520089 | 718..869 | 745 | 99.3 | Plus |
| 3R | 32079331 | 3R | 24520342..24520474 | 867..997 | 550 | 97.7 | Plus |
| X | 23542271 | X | 10406764..10407035 | 435..706 | 535 | 79.8 | Plus |
| Y | 3667352 | Y | 3539720..3540455 | 904..169 | 410 | 70.4 | Minus |
| X | 23542271 | X | 10407156..10407300 | 767..911 | 275 | 79.3 | Plus |
| 3R | 32079331 | 3R | 24518659..24518707 | 36..84 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:09 has no hits.
FMO04635.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:42 Download gff for
FMO04635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 390..1369 | 36..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:04 Download gff for
FMO04635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 403..1382 | 36..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:17 Download gff for
FMO04635.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1alpha-96A-RA | 390..1369 | 36..1011 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:22:17 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:41:42 has no hits.
