FMO04636.5prime Sequence
491 bp (491 high quality bases) assembled on 2008-08-08
> FMO04636.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGATGCCT
CAATTTGTGTTCTGGAGGAGGGATGCCAAAAAGACCCAGCTGGAGCAGAT
CTCGCCCATCTGGAGGGATTTGAATGCTACATTTGTGACGGTTCTCAGCT
GGAGTTGGCTCATCTACGCACTTTCCGCACTGGTAATCATCACTTGTGCA
TATTTCGCTTATTGTGAGCGCTGCCGAAGAACTGAATCAGTGCGACGACG
ACGGGTGATTCAAAGAGCTCAAGAGCGACCGCCACAAAAGCGACGACCGA
ATGCGGCCTATCGGGATCACCAGATCTACCGCCACATCATCCTCAGCGTG
GCCAAGTACATGAAGAATCCGGATGGTATTCGACCCTTTATAGAACACAT
GGAGCAGCTATATCCACTCAGGCATAACTTGGCCGATCAGCAGCAGGTGG
CCGAACCAAGTGCTGGAGAAGATGCAAGCTTTCTAGACCAT
FMO04636.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32240-RA | 645 | CG32240-RA | 144..578 | 39..473 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4380931..4381127 | 473..277 | 985 | 100 | Minus |
| 3L | 28110227 | 3L | 4381190..4381327 | 277..140 | 690 | 100 | Minus |
| 3L | 28110227 | 3L | 4381385..4381486 | 140..39 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:11 has no hits.
FMO04636.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:52 Download gff for
FMO04636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32240-RA | 130..578 | 25..473 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:55 Download gff for
FMO04636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32240-RA | 65..513 | 25..473 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:23 Download gff for
FMO04636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32240-RA | 130..578 | 25..473 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:23 Download gff for
FMO04636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4380931..4381126 | 278..473 | 100 | <- | Minus |
| 3L | 4381190..4381327 | 140..277 | 100 | <- | Minus |
| 3L | 4381386..4381500 | 25..139 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:52 Download gff for
FMO04636.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4381386..4381500 | 25..139 | 95 | | Minus |
| arm_3L | 4380931..4381126 | 278..473 | 100 | <- | Minus |
| arm_3L | 4381190..4381327 | 140..277 | 100 | <- | Minus |
