FMO04638.5prime Sequence
786 bp (780 high quality bases) assembled on 2008-08-08
> FMO04638.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCAGTAAAA
CCGCGCACTTCGTCCTGCCTAACACGCAGCCCATTGCCGATTTGGACTGC
AAGAGTGCCTTCGAGAATCTCACCGAGAAGGAGAAGCTCTACGCCCACCA
CTTCAGCCAGGCCTCCTGGGACGGCGGACTCATTGCCTTGATCCAGTCCA
GTCCGGAGGCGCCGCTCATCTTCTCCCTGCTGCACCGCATTTTCCTAGCC
GAAAAGATTCCTGTTCTTAGGGCGAAAGCCCTGGAGGCGGGAGTGTCTGC
TGATGATTTTACGGCCTTCCTAGTGTACGCCTGCGGTGTGTTCGCCAACG
CGGGCAACTACAAGGGTATGGGCGACAGCAAGATCGTTCCCAATCTCTCA
GAAAAGCAATTTGAGACTATAGTAAAGGCATCCGCTGCTTACAGCGATGA
GCCGCGCGTAGGCAAGATCTTCGAGAAGGTCAAGAATCTGATTTATGCGC
TCGAGTCGCGTAACGAGATCCTGGGCTTTGCTCCCGACGGAATCACCACC
TACTGGTCGGATAACTGCACCAAGGAGGACTCCGAGATCGTGAACGCTTG
GCTGACCTCAAAGCGTATCGAACCGTACATGTGCCGGACCTTCAAGATAG
TTGAAAATGGTCAAACCGTCTACGATGTAAAGCTGGGCTCCGTGGCGGAG
TCCACGCAGGACGGCATCCCACTTTCCGCTGGATAAGAATAATGGCAACA
AGTTTAAGGGGTGACACGCGGTGAATTACCAGAAGC
FMO04638.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DppIII-RC | 2613 | CG7415-RC | 331..1075 | 38..786 | 3595 | 98.9 | Plus |
| DppIII-RB | 2398 | CG7415-RB | 116..860 | 38..786 | 3595 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8345458..8345927 | 313..786 | 2145 | 98.3 | Plus |
| 3R | 32079331 | 3R | 8345124..8345400 | 38..314 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:36:22 has no hits.
FMO04638.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:41 Download gff for
FMO04638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RB | 113..860 | 35..786 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:14:43 Download gff for
FMO04638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RC | 263..1010 | 35..786 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:40 Download gff for
FMO04638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DppIII-RB | 113..860 | 35..786 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:40 Download gff for
FMO04638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8345121..8345399 | 35..313 | 99 | -> | Plus |
| 3R | 8345459..8345927 | 314..786 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:41 Download gff for
FMO04638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4170843..4171121 | 35..313 | 99 | -> | Plus |
| arm_3R | 4171181..4171649 | 314..786 | 98 | | Plus |
