FMO04639.5prime Sequence
1210 bp (1039 high quality bases) assembled on 2008-08-08
> FMO04639.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTTAGTCCCGAG
TACGAGAAGCGCATCCTGAAGCACTACAGTCCTGTGGCACGGAATCTGTT
CAACAACTTCGAGTCGTCCACTACGCCCACATCTCTCGACCGCTTCATAC
CCTGCAGAGCGTACAACAACTGGCAGACGAACTTTGCGTCAATCAACAAG
TCCAATGACAACTCGCCGCAGACGAGTAAGAAGCAGCGGGACTGCGGGGA
AACGGCACGCGATAGTCTCGCCTACTCCTGCCTACTGAAGAACGAGCTCC
TCGGATCGGCAATCGACGACGTGAAGACCGCCGGCGAGGAGCGGAATGAG
AATGCCTACACGCCGGCCGCAAAGCGGAGTCTCTTCAAGTACCAGTCACC
CACCAAGCAGGACTACAATGGCGAGTGTCCGTACTCGTTGTCACCCGTCA
GCGCCAAAAGTCAGAAGCTGTTGCGATCGCCGCGCAAGGCTACGCGCAAA
ATCTCTCGCATTCCCTTCAAGGTGCTAGACGCGCCCGAGTTGCAGGACGA
CTTCTATCTGAACCTGGTCGACTGGTCGTCGCAGAACGTACTGGCTGTAG
GCCTGGGCAGCTGTGTCTATCTGTGGAGCGCGTGCACCAGTCAGGTTACC
CGCCTGTGTGATCTCAGTCCGGATGCGAATACGGTGACCTCGGTGTCGTG
GAACGAGCGTGGCAACACCGTGGCCGTGGGCACACATCACGGCTACGTGA
CCGTCTGGGATGTGGCGGCCAATAAGCAGATCAACAAACTGAATGGCCAT
TCGGCGCGTGTGGGCGCCTTGGCATGGAACAGTGACATCCTGTCGAGCGG
GTCGCGAGACCGTTGGATCATACAGCGGGATACGAGAACGCCGCAACTGC
AATCGGAGCGCAGATTGGCCCGGACATCGGCAGGAGGTGTGCGGACTGAA
ATGGTCACCGGATAATCAATACTTGGGCAGTGGCGGCAACGATAATCGGT
TGTATGTGGTGGATCAGCATTCCGTGATCCCGTACATCATACACGGAGCA
TATTGGCGGCTGTAAGGCGATCGCGGTGGTTCGCCGCATCACCCACGGAC
TCCTGACCAGCGGGCGGTGGTACGCGATTGGTGTATTCCGCTTTTCTGGA
ATACCTGACGCAGCCATGCATGGCGTGAAACCGGCACTTCGCCAGTGTGT
CACACTCTGT
FMO04639.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rap-RA | 2610 | CG3000-RA | 471..1592 | 36..1160 | 5185 | 98.1 | Plus |
| rap-RB | 2516 | CG3000-RB | 377..1498 | 36..1160 | 5185 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4668354..4668822 | 1113..643 | 1900 | 96.8 | Minus |
| X | 23542271 | X | 4674366..4674624 | 411..153 | 1295 | 100 | Minus |
| X | 23542271 | X | 4668902..4669141 | 646..407 | 1200 | 100 | Minus |
| X | 23542271 | X | 4676254..4676375 | 157..36 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:30 has no hits.
FMO04639.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:11 Download gff for
FMO04639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rap-RB | 375..1503 | 36..1169 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:16:26 Download gff for
FMO04639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rap-RB | 375..1503 | 36..1169 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:28 Download gff for
FMO04639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rap-RB | 377..1505 | 36..1169 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:28 Download gff for
FMO04639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4668904..4669137 | 411..644 | 100 | <- | Minus |
| X | 4674367..4674619 | 158..410 | 100 | <- | Minus |
| X | 4676254..4676375 | 36..157 | 100 | | Minus |
| X | 4668301..4668820 | 645..1169 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:11 Download gff for
FMO04639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4562334..4562853 | 645..1169 | 95 | <- | Minus |
| arm_X | 4562937..4563170 | 411..644 | 100 | <- | Minus |
| arm_X | 4568400..4568652 | 158..410 | 100 | <- | Minus |
| arm_X | 4570287..4570408 | 36..157 | 100 | | Minus |
