FMO04640.5prime Sequence
579 bp (579 high quality bases) assembled on 2008-08-08
> FMO04640.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCTACTTGCG
ATCGATAGAAATCTCACGCGTCGAAATGTCGCCGGCTGACGATAATTCCT
TTGCCACAACTCATGGAAACAAAAAGGCCACCTACACGGTGATATGCATC
AAGATTGTGGAACTGTGCCTGCTTATATGCTGTTTGGGTCTGATCGACGA
GCCGGCCACCAATTCTCATCTGCGGGTGTTCATCACTCCCCGAGTGGCTT
CCCTTTGCTATGTGACCTTTGGAGCACTGACCATCTACACGGCAATCTAT
CTGATAATGGCGCTCTTCGGTGATTTGACTCCATGGCGTACGGCTACTTT
GTGGAATCTAGTGGCCTTTGTGCTCTTCGTGGCCGTAACCGCCCTGCTTT
TCCGGGATTGGTCCACCACCAAGGATCGCAACTACTGGCACCCGAATATG
CATCGTTTGGATCTCGTGATGGCTTCCGCCTCGATTGCCTTGGTTACCTC
GCTGGTCTTCTTGCTGGACATACTCATCACCCTGCGTTTAGGTGTCCACG
GTGATCTAAAAGCAAGCTTTCTAGACCAT
FMO04640.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9628-RC | 890 | CG9628-RC | 173..694 | 37..558 | 2610 | 100 | Plus |
| CG9628-RB | 1053 | CG9628-RB | 145..666 | 37..558 | 2610 | 100 | Plus |
| CG9628-RA | 1125 | CG9628-RA | 239..738 | 59..558 | 2500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14627556..14627787 | 327..558 | 1160 | 100 | Plus |
| 3L | 28110227 | 3L | 14627334..14627496 | 165..327 | 815 | 100 | Plus |
| 3L | 28110227 | 3L | 14627018..14627126 | 57..165 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib4 | 2656 | transib4 TRANSIB4 2656bp | 1981..2031 | 50..99 | 126 | 74.5 | Plus |
FMO04640.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:22 Download gff for
FMO04640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9628-RB | 137..669 | 28..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:11:42 Download gff for
FMO04640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9628-RB | 125..657 | 28..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:16 Download gff for
FMO04640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9628-RB | 137..669 | 28..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:16 Download gff for
FMO04640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14627020..14627126 | 59..165 | 100 | -> | Plus |
| 3L | 14627335..14627495 | 166..326 | 100 | -> | Plus |
| 3L | 14627556..14627790 | 327..561 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:22 Download gff for
FMO04640.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14620120..14620226 | 59..165 | 100 | -> | Plus |
| arm_3L | 14620435..14620595 | 166..326 | 100 | -> | Plus |
| arm_3L | 14620656..14620890 | 327..561 | 99 | | Plus |
