FMO04641.5prime Sequence
1229 bp (1075 high quality bases) assembled on 2008-08-08
> FMO04641.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGCCCTTCA
AGATCAAGTTCCGGATGGGCAGCTCGCGCAGCACCTCGCAGGAGCACGAC
CCCGACCCGCAGGTGAACGAGGCGCTCCTGGGCGCCCAGAGCCAGCAGCA
GAACGGGCAGCCCCTCCAGGAGGCGGTGGAGGCCAGCAGCAGCTCCAGCC
TCGACCTCGCGGACTCCAGCAGTCTCGGCCAGCTGAGCAGCGAGCGCAAG
CTGCTCCTGCCGCCCACCACCAGTAGCAGCACCATGCGATTGGGATATCT
TAACCAGAACCGCACTCCGTGCATCAACGAATCGTTGGCGGATACGGATG
CAGACACAGTGCCCACCACCCCACCGCCTTCCTACGAGCATGTTCTAGAG
GAGAACACTCGGTTGTCCCAACACCAGCGACAGTTGTCCCTGGACAGCGC
CACTCCGAACCAGAACAGCCGGCGCAGCTCGGCGAACAGCTCACGGCACA
GTGCCGCCCAGCTGAGTGCCGCCTTGGAGCAGCTGGCCGGGAATGGAGGC
GCCGGGGAGTACTGCAACGACCCGGACTGCAGGCAGAACTTGAACAACAA
CGGAGCCACCAGCCACAACGGCAACCACATCCAGAACGCGAACAACAACA
ACGACGGCGAGCAGATCTTCGAGGGCGTCACGGAACTGGAGCTGCGAAGC
GACAACGAGGAGCAGCTTAGCATCAACGAGTTCCTGCTGGAGACAGAGAT
GGCGGCCTCACCGTCCCGCCGTCTGGAGGATCGATACGCGGGTGGCGCAT
GAGCGGACGAGGATCAGGGCGGCCAGTGCCAGGACGATCAGTGCGCGCAG
TGCAGCGAGGAGCGGGCCAGCGGAGAGGACAGGGATGCGGCCAGCACCAG
CAGTCAGGCGGCGGCATCGTCCGGCGGTGGCAACAACTTTTACGATCCGC
TCCTGAATCGGGGCAGCTACGCAAACTACAGTGAAGGTGGCTCTGCGAGT
TCGGGGCCTGGTTCGGGCCAACGGCCAAATGTGCCAGAGCCTGCTGCAGC
GGATCCGCATCGGATCGACTGCATCAGGGGCGGGCGGGAGTGGTAGCGCA
GAACAAGCAGGTCAGCCGCCCAACCTGCCAACAGCTGCTCACGCCGGAAA
TGTATGACCACATGACAGACCAGGTATCTCCAAGAACCTGCCGAGCCAGG
TGGGCCATTACACTCGGTGGAAGATAAAT
FMO04641.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3257-RA | 2911 | CG3257-RA | 306..1428 | 37..1152 | 5215 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24120890..24121476 | 402..988 | 2920 | 99.8 | Plus |
| 2R | 25286936 | 2R | 24119998..24120255 | 37..294 | 1290 | 100 | Plus |
| 2R | 25286936 | 2R | 24120711..24120821 | 293..403 | 555 | 100 | Plus |
| 2R | 25286936 | 2R | 24121531..24121623 | 985..1075 | 275 | 93.6 | Plus |
Blast to na_te.dros performed 2014-11-28 22:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2443 | 577..666 | 132 | 66.7 | Plus |
FMO04641.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:17 Download gff for
FMO04641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3257-RA | 303..1442 | 34..1166 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:13 Download gff for
FMO04641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3257-RA | 306..1445 | 34..1166 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:08 Download gff for
FMO04641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3257-RA | 303..1442 | 34..1166 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:08 Download gff for
FMO04641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24119979..24120254 | 19..293 | 96 | -> | Plus |
| 2R | 24120712..24120821 | 294..403 | 100 | -> | Plus |
| 2R | 24120892..24121474 | 404..986 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:17 Download gff for
FMO04641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20007502..20007777 | 19..293 | 96 | -> | Plus |
| arm_2R | 20008235..20008344 | 294..403 | 100 | -> | Plus |
| arm_2R | 20008415..20008997 | 404..986 | 99 | -> | Plus |
