FMO04642.5prime Sequence
597 bp (388 high quality bases) assembled on 2008-08-08
> FMO04642.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCTGGCAAAG
TGTTCCCCAGTATCCCCAATACCAAGATCCCAACCAGCAGTACAACTATG
GCGGCGGTAATCCCCCGCAGGGAGGATATGGTGGATATCCACCTCAGGGC
GGCTATCCACCTCAAGGACCGCCGCAAGGCTACCCACCCTATGCACAAGG
AGGTGCTCAACCCTATCCACAGCCCTACGGACAGGGGCCTCCACCGGGAG
GTTATGCTCCCCAGCCGGGATTTATCCAACCACCACCATCTGCTGGCGGC
TACGGAGCCTACGATGATCCGGAGAGCCAGCCCAAGAACTTCTCGTTTGA
CGACCAAAGCATCCGTCGCGGATTCATACGTAAGGGGTACCTGATTCTAA
ATGGAACAACTAATCGTCCTTTTTGGACTGTGCCCTGGTTTGTATACCAC
GAGGGCATAAAAACTTTGCAGGAATAACATGGGGTTCTTTTGGGTGGCCC
CGCGAAAGTTGTAAACCTGCTGTCTATGGCTTGCTGAAAATGTGCGCCGC
AAACCCGACAAATTCAATTTCTTGGTGCGTTTAAACACACAACGTTT
FMO04642.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmda1-RE | 1742 | CG3798-RE | 207..756 | 37..575 | 2170 | 94.6 | Plus |
| Nmda1-RC | 1701 | CG3798-RC | 166..715 | 37..575 | 2170 | 94.6 | Plus |
| Nmda1-RD | 1800 | CG3798-RD | 265..814 | 37..575 | 2170 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12878387..12878712 | 400..75 | 1615 | 99.7 | Minus |
| 2R | 25286936 | 2R | 12879052..12879091 | 76..37 | 200 | 100 | Minus |
| 2R | 25286936 | 2R | 12878222..12878319 | 500..406 | 190 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:51 has no hits.
FMO04642.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:15 Download gff for
FMO04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RD | 255..797 | 28..559 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:41 Download gff for
FMO04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RE | 197..739 | 28..559 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:19 Download gff for
FMO04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RD | 255..797 | 28..559 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:19 Download gff for
FMO04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12878385..12878710 | 77..403 | 99 | <- | Minus |
| 2R | 12879052..12879097 | 28..76 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:15 Download gff for
FMO04642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8765890..8766215 | 77..403 | 99 | <- | Minus |
| arm_2R | 8766557..8766602 | 28..76 | 91 | | Minus |
