FMO04643.5prime Sequence
417 bp (417 high quality bases) assembled on 2008-08-08
> FMO04643.5prime
TCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGTGAAACTAAT
TGCTAGCCTGCTCCTGTTGGCCGTGGTGGCCCAGGCCTATGGAGATTTCA
AGTGCTCCCTGGCTGTTCCTGAGATTACCAAGGACTGGGTGGACATGAAG
GATGCCTGCATAAAGGGCATGCGCAATCAGATCCAGGAGGAGATCAACGC
CTCCTACCAGTACTTGGCCATGGGCGCCTACTTCTCCCGCGACACCGTCA
ACCGCCCTGGATTCGCCGAGCACTTCTTCAAGGCCGCCAAGGAGGAACGT
GAGCACGGATCCAAGCTGGTGGAGTACCTGTCCATGCGCGGTCAACTGAC
CGAGGGAGTCAGCGATCTGATCAATGTGCCGGTAAGTCGACGACTCGCCG
CAAGCTTTCTAGACCAT
FMO04643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fer1HCH-RE | 1197 | CG2216-RE | 107..469 | 37..399 | 1815 | 100 | Plus |
| Fer1HCH-RD | 1187 | CG2216-RD | 159..503 | 37..381 | 1725 | 100 | Plus |
| Fer1HCH-RC | 1227 | CG2216-RC | 199..543 | 37..381 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30386301..30386596 | 399..104 | 1480 | 100 | Minus |
| 3R | 32079331 | 3R | 30387463..30387530 | 104..37 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:44 has no hits.
FMO04643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:56 Download gff for
FMO04643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 107..469 | 37..399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:10:22 Download gff for
FMO04643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 371..733 | 37..399 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:18 Download gff for
FMO04643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fer1HCH-RE | 107..469 | 37..399 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:18 Download gff for
FMO04643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30386301..30386596 | 104..399 | 100 | <- | Minus |
| 3R | 30387464..30387530 | 37..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:56 Download gff for
FMO04643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26212023..26212318 | 104..399 | 100 | <- | Minus |
| arm_3R | 26213186..26213252 | 37..103 | 100 | | Minus |
