FMO04646.5prime Sequence
1238 bp (1031 high quality bases) assembled on 2008-08-08
> FMO04646.5prime
ACTTCGTATAGCATACATTAAACAAAGTTATCAGTCGACATGGCGGCCCA
GACGATACTGTTTGATTTCACGCTGGACAAGGACAAGACGGCGGATGAGG
AGGCGCGCCTCCAGGTGGCCAAAATCCTGCGTAACGAGCTGGAGCAGCTG
TTCCCCCAGCTGGAGCTGGCCTACTCGATGGAGTCGCCGGAAAACGGCTA
CTTTGCGGTGCTGCACGAGAACAAGGACACGGTGATTACCTGCCGCATCT
TCCAGCACGGCCTGCTGACGCTCAACGTGGAGTACTTCCTGCCCGATGGC
AAGGAGCCGAGCATATCCTTCGACACCATGCGCACCATGGAACTGATTTT
GCGGCAGAAATTTGATTCCGATCGGTCCAAGTACTTGCCGCCGATTAAAC
GCGGCGGATATATCGACATATATATGACTAGCTCAGATGAGCGCATCATC
GAGTACGACATCGACAAGGTGGTCTTCGAGGCGCGCTCGCCCTTCCAGAA
GATTCAAATCATGCACTCCAAGACCCTGGGCAACATGCTGCTCCTCGACG
AGCTGCAGAACATTGCTGAATCCGATTTGATTTACACGGAGACCCTGATG
TGTCGCGGCGTGGAGAACTACGAGGGCAAGGAGATCTGCATCCTGGGCGG
CGGTGATGGCGCCTTGTTGTACGAGCTACTCAAGGAGAATCCGAAGCATG
TGGTGATGCTGGAGATCGATGAGCTTGTGATGCAAACCTGCAACAAATAC
CTCAACGTGATCTGCGGCGATGTGCTGGAGAAACGCAAGGGCGATCAGTA
CGAGATCATTGTGGGCGACTGTGTGGAGTACTTGAAGAAGTTCATCGCCG
AGGGCCGCAAGTTCGACTACGTTTTTGGGGATCTTACGGACATACCCATA
ACCGATGCCCCGGAGGGCGAGACCTGGGATTTCATTCGTACCATTCTTCG
AGCACTCTTTCAGGTGCTGAAACCGACGGAAAGTATTTGACTCATGGCAT
GGGTCCACCTGCAAGGTGCAGCTGCGTCTATCGAGGAGCAGTTGAATTTG
CTGCGTCCCAAGGTGAAGTCACCACCACAAGGCGTTTGGTGCCGTCGGTT
CATGGAAGAGGGACTTTCTACAAGTGACTTCGCGCAAGCTTCCTGACCAT
CGTTTGGGCCGCGCGGCCAGTATGTCTATACCTAAGTCTAAGTCGTAGAC
TCGTAATCCACATAGGCTTGAGAGAAATCTGTGTCATC
FMO04646.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4300-RD | 1983 | CG4300-RD | 78..1173 | 40..1130 | 5175 | 98.7 | Plus |
| CG4300-RA | 1983 | CG4300-RA | 78..1173 | 40..1130 | 5175 | 98.7 | Plus |
| CG4300-RC | 1980 | CG4300-RC | 468..1170 | 433..1130 | 3210 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12272488..12273041 | 1110..560 | 2325 | 97.5 | Minus |
| 3L | 28110227 | 3L | 12276890..12277174 | 324..40 | 1425 | 100 | Minus |
| 3L | 28110227 | 3L | 12273498..12273623 | 559..434 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 12275076..12275187 | 436..325 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:34 has no hits.
FMO04646.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:30 Download gff for
FMO04646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RA | 66..1177 | 25..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:12:11 Download gff for
FMO04646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RA | 81..1192 | 25..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:26 Download gff for
FMO04646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RA | 66..1177 | 25..1133 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:26 Download gff for
FMO04646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12272462..12273041 | 560..1133 | 97 | <- | Minus |
| 3L | 12273498..12273620 | 437..559 | 100 | <- | Minus |
| 3L | 12275076..12275187 | 325..436 | 100 | <- | Minus |
| 3L | 12276890..12277186 | 25..324 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:30 Download gff for
FMO04646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12265562..12266141 | 560..1133 | 97 | <- | Minus |
| arm_3L | 12266598..12266720 | 437..559 | 100 | <- | Minus |
| arm_3L | 12268176..12268287 | 325..436 | 100 | <- | Minus |
| arm_3L | 12269990..12270286 | 25..324 | 98 | | Minus |
