FMO04647.5prime Sequence
1210 bp (992 high quality bases) assembled on 2008-08-08
> FMO04647.5prime
TTCGTATAGCATACATTATACGAAGTTATCAATCGACATGAAGCTCGGAT
TTCTGGGCCTTTTTGGCATGGTGCTCAGTTTGCGGGCCCATATATGTGCA
AATACTGTTGATACGAAGAGTCTATTACAAAAAATGACGGACGCAAGGCT
TCAATTTGCCCTCAACCTGCTGCAAATGGAATCCACGCATTTAAACCTGG
AAAACTTTGCGATGACGCCATTTTCCACGTGGTCACTTATGATCATGTTC
TACGAGGGAGCAGAGGGGACTACCTTGAAGCAGATACGTGATGTCCTGGC
GATCTATGTCGATTATCCAACACTGCGCAGGTGGTACGAGGATGTCCGAG
CTTATCACTATTTAAATTCGGAAAACACAAAACTGTTTTCGCTGCGTTAC
GCTTACTACGACGATGTAGGAGATTTAGAACTCGTGAAAGGGTACAACAG
TGTAATCCTAGAAGGAGTAGGAGAAGGAAATGTGGTTCTTCGAGAGGGTC
GGCCAAGGGGTGTGGACTTCGACCAGGGGGCGAGTATAATTATCAACGAC
GATATCGACAAAGCCTCTCATGCGAAAATCTTCAGTTCTTATAGCCGTCG
TTCGTTCAATAGTACAGTAACTGTGCTGGGGATTACTGTTAGCTACTTTA
AGGCCAAATGGAAGTATCCATTCGATAAGTCCCAGACGAAAGTGGAACAG
TTTTACAACGCCGGCGGCTCGCCGGCAGGTAAGGTGGAGATGATGGTGCA
AACGGGGAAGTATGCCTACGTCAATAATGTAAAGGGTCTGCAAGCGGATG
TCCTGCAGCTACCTTTTGGGGAACATGAGCTAGTAATGATCGTCATACTG
CCGAAGCCTTCCCAGAGAGTAAGCCTGGTGCTCAACAATTGAAGAACCTG
GGACTACATCGCCTCCTTGATGAACTCGAGGCCTCGAGATTGAATCTGAT
GTAGAAGTCAGCTTCCCTAGTTCGATACGCGATCCGTACTTTCACTCGAG
GATACCGTATATGAGCTGACTTACTGATCTGAGAATGACTCGTAAATCTA
GTCGCATGCTGATCTACTGGGACGAGGTGCGTACCTTCTCCCTTCACACA
GTCGCAGGATCGTCGTAAATAAGAACGGCTGCTATGCTGTTCCAAACGCT
TCTGACATTACTTAGTTCCATTAACTGGCGTTTGCTACTTCTCAGAACCC
ACACTTGTGC
FMO04647.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn77Bc-RB | 1430 | CG6289-RB | 40..1134 | 38..1117 | 4835 | 97 | Plus |
| Spn77Bc-RA | 1440 | CG6289-RA | 50..1144 | 38..1117 | 4835 | 97 | Plus |
| Spn77Bb-RA | 1161 | CG6663-RA | 74..893 | 239..1051 | 3400 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20342738..20343060 | 38..360 | 1615 | 100 | Plus |
| 3L | 28110227 | 3L | 20343497..20343852 | 663..1015 | 1540 | 97.5 | Plus |
| 3L | 28110227 | 3L | 20343128..20343431 | 361..664 | 1505 | 99.7 | Plus |
| 3L | 28110227 | 3L | 20321269..20321572 | 361..664 | 1475 | 99 | Plus |
| 3L | 28110227 | 3L | 20321638..20321992 | 663..1014 | 1385 | 94.6 | Plus |
| 3L | 28110227 | 3L | 20321080..20321201 | 239..360 | 445 | 91 | Plus |
| 3L | 28110227 | 3L | 20321041..20321080 | 38..77 | 185 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:40 has no hits.
FMO04647.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:27 Download gff for
FMO04647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn77Bc-RA | 50..1157 | 38..1130 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:52 Download gff for
FMO04647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6289-RA | 33..1140 | 38..1130 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:07 Download gff for
FMO04647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn77Bc-RA | 50..1157 | 38..1130 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:07 Download gff for
FMO04647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20343128..20343431 | 361..664 | 99 | -> | Plus |
| 3L | 20342729..20343060 | 31..360 | 98 | -> | Plus |
| 3L | 20343499..20343852 | 665..1015 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:27 Download gff for
FMO04647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20335829..20336160 | 31..360 | 98 | -> | Plus |
| arm_3L | 20336228..20336531 | 361..664 | 99 | -> | Plus |
| arm_3L | 20336599..20336952 | 665..1015 | 97 | -> | Plus |
