FMO04648.5prime Sequence
814 bp (814 high quality bases) assembled on 2008-08-08
> FMO04648.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGTTCTCACTGG
GCAGCGGCAAGGCCAACATGGATCCAGCGCTGATCAACTTTAAGGTGCTC
TATGTGCTCACCCAGCTGTGCGGCCTGACCATGATCGTCCTGGTGGCCAC
CTGGATTGGCCAGCACTTCGGCGGTCTGGCCGGCACCTCAAATCCCGGCG
TGGAGTTCAACTGGCATCCGCTGTTCATGACCATTGGCTTCATTTACCTG
TATGGCAACTCCATTCTGATCTATCGTGGTTTCCGCACCACGCGCAAGAA
GACTCTGAAGCTTACCCACGCCGGCATCCACATGGGTGCATTCATTCTGA
CGGTGATTGCCCTGAAGACGGTCTTCGATTCCCACAACTTGGCCAATCCG
CCCATTCCCAACATGTACTCCCTGCACTCTTGGCTGGGGCTCTCCGCGGT
GATCGTCTTCTCGCTGCAGTATGTGGCCGGATTTGTGGCCTTTTTGGCGC
CGGGGTTGAGGGAGAACTACAGGATCGCCATGATGCCGCTGCACATCTAC
TTCGGACTCTTTGGATTCGTTCTGGCTATTGCTAGTGCCCTGATGGGCAT
AACCGAGAAGGCCATCTTCGCCATCAAAACTCCGGCTTACTCCACTCTTC
CACCGGCTGGTGTGTTGGCCAATGTGATTGGAGTAATGTACGTGGTCTTC
GGGGCGCTGGTTGTCTACCTAGCCACTGAGCCCTCCTACAAGCGGAAGCC
CATTCCCGAGGACACGGCTCTGCTGAACTCCAGTTCTGTCAACGAGGCAA
GCTTTCTAGACCAT
FMO04648.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1275-RC | 1300 | CG1275-RC | 191..953 | 34..796 | 3815 | 100 | Plus |
| CG1275-RA | 1574 | CG1275-RA | 472..1218 | 50..796 | 3735 | 100 | Plus |
| CG1275-RB | 1698 | CG1275-RB | 596..1342 | 50..796 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2253329..2253692 | 624..261 | 1820 | 100 | Minus |
| 3L | 28110227 | 3L | 2253777..2253987 | 260..50 | 1055 | 100 | Minus |
| 3L | 28110227 | 3L | 2253100..2253271 | 796..625 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:37:49 has no hits.
FMO04648.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:12 Download gff for
FMO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RC | 184..957 | 24..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:17:20 Download gff for
FMO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RC | 130..903 | 24..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:31 Download gff for
FMO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1275-RC | 184..957 | 24..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:31 Download gff for
FMO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2253329..2253692 | 261..624 | 100 | <- | Minus |
| 3L | 2253777..2253986 | 51..260 | 100 | <- | Minus |
| 3L | 2253096..2253271 | 625..801 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:12 Download gff for
FMO04648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2253096..2253271 | 625..801 | 98 | <- | Minus |
| arm_3L | 2253329..2253692 | 261..624 | 100 | <- | Minus |
| arm_3L | 2253777..2253986 | 51..260 | 100 | <- | Minus |
